Construct: ORF ccsbBroadEn_10987
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006997.1_s300c1, BRDN0000393537
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NAB2 (4665)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4665 | NAB2 | NGFI-A binding protein 2 | NM_001330305.2 | 50.4% | 44.9% | (many diffs) |
| 2 | human | 4665 | NAB2 | NGFI-A binding protein 2 | NM_005967.4 | 44.3% | 39.5% | (many diffs) |
| 3 | mouse | 17937 | Nab2 | Ngfi-A binding protein 2 | NM_001122895.1 | 45.5% | 41.8% | (many diffs) |
| 4 | mouse | 17937 | Nab2 | Ngfi-A binding protein 2 | NM_008668.2 | 39.9% | 36.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 789
- ORF length:
- 723
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCA CAGAGCGCCT TCCCCCACAG CCGAGCAGCC GCCGGGCGGA GGGGACAGCG 121 CCCGCCGGAC CCTGCAGCCC AGACTCAAGC CCAGTGCCCG AGCCATGGCA CTGCCTCGGA 181 CGCTGGGGGA GCTGCAGCTG TACCGGGTCC TGCAGCGCGC CAACCTCCTT TCCTACTATG 241 AGACCTTCAT CCAGCAGGGA GGGGACGACG TGCAGCAGCT GTGTGAGGCG GGTGAGGAGG 301 AGTTTCTGGA GATCATGGCA CTTGTGGGCA TGGCCACCAA GCCCCTCCAT GTCCGGCGCC 361 TGCAGAAGGC ACTGAGAGAG TGGGCCACCA ATCCAGGGCT CTTCAGTCAA CCAGTGCCTG 421 CTGTTCCCGT CTCCAGCATC CCGCTCTTCA AGATCTCTGA GACTGCGGGT ACCCGGAAAG 481 GGAGCATGAG CAATGGGCAT GGCAGCCCAG GGGAAAAGGC AGGCAGTGCC CGCAGTTTTA 541 GCCCCAAGAG CCCCCTTGAA CTTGGAGAGA AGCTATCACC ACTGCCTGGG GGACCTGGGG 601 CAGGGGACCC CCGGATCTGG CCAGGCCGGA GCACTCCAGA GTCGGACGTT GGGGCAGGAG 661 GAGAAGAGGA GGCTGGCAGC AGGTGGGACT GGGGGTGGTC CAGACCGACT GGAGCCAGAG 721 ATGGTACGCC AGCCTGTCTG GGGAGAGTCT GGATGGACAT TTGCAGGCTG TGGGGTCATG 781 TCCAAGGCTG CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 841 tttgttgcaa cgaac