Construct: ORF ccsbBroadEn_11007
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011351.1_s300c1, BRDN0000398535
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- OAZ1 (4946)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4946 | OAZ1 | ornithine decarboxylase ant... | NM_004152.3 | 29.7% | 100% | 205_685del |
| 2 | human | 4946 | OAZ1 | ornithine decarboxylase ant... | NM_001301020.1 | 28.9% | 97% | 144_145insAGTTCC;199_679del |
| 3 | mouse | 18245 | Oaz1 | ornithine decarboxylase ant... | NM_008753.4 | 27.1% | 89.7% | (many diffs) |
| 4 | mouse | 18245 | Oaz1 | ornithine decarboxylase ant... | NM_001301034.1 | 26.3% | 86.7% | (many diffs) |
| 5 | mouse | 100041965 | Oaz1-ps | ornithine decarboxylase ant... | NR_027656.1 | 19.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 273
- ORF length:
- 204
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGTGAAATCC TCCCTGCAGC GGATCCTCAA TAGCCACTGC TTCGCCAGAG 121 AGAAGGAAGG GGATAAACCC AGCGCCACCA TCCACGCCAG CCGCACCATG CCGCTCCTAA 181 GCCTGCACAG CCGCGGCGGC AGCAGCAGTG AGAGTTCCAG GGTCTCCCTC CACTGCTGTA 241 GTAACCCGGG TCCGGGGCCT CGGTGGTGCT CCTTGCCAAC TTTCTTGTAC AAAGTtggca 301 ttataagaaa gcattgctta tcaatttgtt gcaacgaac