Construct: ORF ccsbBroadEn_11030
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003731.1_s300c1, BRDN0000397409
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SERPINB5 (5268)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 5268 | SERPINB5 | serpin family B member 5 | NM_002639.5 | 57.8% | 48.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 759
- ORF length:
- 693
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA TGCCCTGCAA CTAGCAAATT CGGCTTTTGC CGTTGATCTG TTCAAACAAC 121 TATGTGAAAA GGAGCCACTG GGCAATGTCC TCTTCTCTCC AATCTGTCTC TCCACCTCTC 181 TGTCACTTGC TCAAGTGGGT GCTAAAGGTG ACACTGCAAA TGAAATTGGA CAGGTTCTTC 241 ATTTTGAAAA TGTCAAAGAT GTACCCTTTG GATTTCAAAC AGTAACATCG GATGTAAACA 301 AACTTAGTTC CTTTTACTCA CTGAAACTAA TCAAGCGGCT CTACGTAGAC AAATCTCTGA 361 ATCTTTCTAC AGAGTTCATC AGCTCTACGA AGAGACCCTA TGCAAAGGAA TTGGAAACTG 421 TTGACTTCAA AGATAAATTG GAAGAAACGA AAGGTCAGAT CAACAACTCA ATTAAGGATC 481 TCACAGATGG CCACTTTGAG AACATTTTAG CTGACAACAG TGTGAACGAC CAGACCAAAA 541 TCCTTGTGGT TAATGCTGCC TACTTTGTTG GCAAGTGGAT GAAGAAATTT CCTGAATCAG 601 AAACAAAAGA ATGTCCTTTC AGAGTCAACA AGGTATGTGG GGCAGCATGT AGCAGTAAAA 661 GGAGCCCAAT TATAGATGTG AAAAATGACA GGGACAGAGT GGGGCATAAA TCCATTCCAA 721 TGAGGAACCT GAGGGCACGG CCGGCAAAGT GCCTTTCCTG CCCAACTTTC TTGTACAAAG 781 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac