Construct: ORF ccsbBroadEn_11061

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012415.1_s300c1, BRDN0000396302
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PRSS2 (5645)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5645 PRSS2 serine protease 2 NM_002770.4 96.7% 96.7% 718_741del
2 human 5645 PRSS2 serine protease 2 NM_001303414.1 91.5% 91.5% 201_242del;760_783del
3 human 5646 PRSS3 serine protease 3 NM_002771.3 90.3% 85.4% (many diffs)
4 human 5644 PRSS1 serine protease 1 NM_002769.5 89.8% 86.6% (many diffs)
5 human 5646 PRSS3 serine protease 3 NM_001197098.1 86.1% 82.1% (many diffs)
6 human 5646 PRSS3 serine protease 3 NM_001197097.2 83.9% 77.7% (many diffs)
7 human 5645 PRSS2 serine protease 2 NR_130149.2 79.4% 1_13del;52_53ins74;657_735del
8 human 154754 PRSS3P2 PRSS3 pseudogene 2 NR_001296.3 77.7% (many diffs)
9 human 5646 PRSS3 serine protease 3 NM_007343.3 72.4% 68% (many diffs)
10 human 5646 PRSS3 serine protease 3 XM_011517965.1 65.3% 60.9% (many diffs)
11 human 5644 PRSS1 serine protease 1 XM_011516411.1 47% 45.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
783
ORF length:
717
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAA TCTACTTCTG ATCCTTACCT TTGTTGCAGC TGCTGTTGCT GCCCCCTTTG
121ATGATGATGA CAAGATCGTT GGGGGCTACA TCTGTGAGGA GAATTCTGTC CCCTACCAGG
181TGTCCTTGAA TTCTGGCTAC CACTTCTGCG GTGGCTCCCT CATCAGCGAA CAGTGGGTGG
241TGTCAGCAGG TCACTGCTAC AAGTCCCGCA TCCAGGTGAG ACTGGGAGAG CACAACATCG
301AAGTCCTGGA GGGGAATGAA CAGTTCATCA ATGCGGCCAA GATCATCCGC CACCCCAAAT
361ACAACAGCCG GACTCTGGAC AATGACATCC TGCTGATCAA GCTCTCCTCA CCTGCCGTCA
421TCAATTCCCG CGTGTCCGCC ATCTCTCTGC CCACTGCCCC TCCAGCTGCT GGCACCGAGT
481CCCTCATCTC CGGCTGGGGC AACACTCTGA GTTCTGGTGC CGACTACCCA GACGAGCTGC
541AGTGCCTGGA TGCTCCTGTG CTGAGCCAGG CTGAGTGTGA AGCCTCCTAC CCTGGAAAGA
601TTACCAACAA CATGTTCTGT GTGGGCTTCC TCGAGGGAGG CAAGGATTCC TGCCAGGGTG
661ATTCTGGTGG CCCTGTGGTC TCCAATGGAG AGCTCCAAGG AATTGTCTCC TGGGGCTATG
721GCTGTGCCCA GAAGAACAGG CCTGGAGTCT ACACCAAGGT CTACAACTAT GTGGACTGGA
781TTTACCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt
841gcaacgaac

Download FASTA (ORF) (Full)