Construct: ORF ccsbBroadEn_11072
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008372.1_s300c1, BRDN0000388651
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PTMS (5763)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 5763 | PTMS | parathymosin | NM_001330333.2 | 92.4% | 88.4% | (many diffs) |
| 2 | human | 5763 | PTMS | parathymosin | NM_002824.6 | 55.6% | 24.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 372
- ORF length:
- 306
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC CAGGAGAGAG AGTCCTCAGG AAAAGGCCCC AGAGGACCTG AAGGAGAAGA 121 AGGAGAAGGT GGAGGAGAAG GCAAGCCGGA AAGAGCGAAA GAAAGAAGTG GTGGAGGCTC 181 CAGTCCCATT GGTGGTGATG GTGGGCAAGG CATGCAGCCA GCCTGAGGCT ACTCCCTCTC 241 CTGGTCCCCA CAGGAGGAGG AGAACGGGGC TGAGGAGGAA GAAGAAGAAA CTGCCGAGGA 301 TGGAGAGGAG GAAGATGAAG GGGAAGAAGA AGATGAGGAA GAAGAAGAAG AGGATGATGA 361 AGGGCCCGCG CTGCCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 421 caatttgttg caacgaac