Construct: ORF ccsbBroadEn_11081
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002860.1_s300c1, BRDN0000392062
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PTPRS (5802)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 5802 | PTPRS | protein tyrosine phosphatas... | XM_005259610.1 | 8.5% | 8.4% | 261A>C;377_378delGA;386_4491delinsT |
| 2 | human | 5802 | PTPRS | protein tyrosine phosphatas... | NM_130853.3 | 8.4% | 8.3% | 261A>C;377_378delGA;386_4503delinsT |
| 3 | human | 5802 | PTPRS | protein tyrosine phosphatas... | XM_005259609.1 | 8.4% | 8.3% | 261A>C;377_378delGA;386_4503delinsT |
| 4 | human | 5802 | PTPRS | protein tyrosine phosphatas... | NM_130855.3 | 8.4% | 8.3% | 261A>C;377_378delGA;386_4515delinsT |
| 5 | human | 5802 | PTPRS | protein tyrosine phosphatas... | XM_017027076.1 | 8.4% | 8.3% | 261A>C;377_378delGA;386_4515delinsT |
| 6 | human | 5802 | PTPRS | protein tyrosine phosphatas... | XM_011528157.2 | 8.3% | 8.3% | 261A>C;377_378delGA;386_4551delinsT |
| 7 | human | 5802 | PTPRS | protein tyrosine phosphatas... | XM_017027075.1 | 8.3% | 8.3% | 261A>C;377_378delGA;386_4551delinsT |
| 8 | human | 5802 | PTPRS | protein tyrosine phosphatas... | XM_017027074.1 | 8.3% | 8.2% | 261A>C;377_378delGA;386_4563delinsT |
| 9 | human | 5802 | PTPRS | protein tyrosine phosphatas... | XM_005259607.2 | 6.6% | 6.6% | 261A>C;377_378delGA;386_5718delinsT |
| 10 | human | 5802 | PTPRS | protein tyrosine phosphatas... | NM_130854.3 | 6.6% | 6.5% | 261A>C;377_378delGA;386_5730delinsT |
| 11 | human | 5802 | PTPRS | protein tyrosine phosphatas... | XM_005259606.2 | 6.6% | 6.5% | 261A>C;377_378delGA;386_5730delinsT |
| 12 | human | 5802 | PTPRS | protein tyrosine phosphatas... | XM_017027072.1 | 6.6% | 6.5% | 261A>C;377_378delGA;386_5730delinsT |
| 13 | human | 5802 | PTPRS | protein tyrosine phosphatas... | XM_017027071.1 | 6.6% | 6.5% | 261A>C;377_378delGA;386_5757delinsT |
| 14 | human | 5802 | PTPRS | protein tyrosine phosphatas... | XM_017027070.1 | 6.6% | 6.5% | 261A>C;377_378delGA;386_5769delinsT |
| 15 | human | 5802 | PTPRS | protein tyrosine phosphatas... | XM_017027069.1 | 6.5% | 6.5% | 261A>C;377_378delGA;386_5790delinsT |
| 16 | human | 5802 | PTPRS | protein tyrosine phosphatas... | XM_005259600.2 | 6.5% | 6.5% | 261A>C;377_378delGA;386_5805delinsT |
| 17 | human | 5802 | PTPRS | protein tyrosine phosphatas... | XM_017027068.1 | 6.5% | 6.5% | 261A>C;377_378delGA;386_5805delinsT |
| 18 | human | 5802 | PTPRS | protein tyrosine phosphatas... | XM_017027065.1 | 6.5% | 6.4% | 261A>C;377_378delGA;386_5817delinsT |
| 19 | human | 5802 | PTPRS | protein tyrosine phosphatas... | XM_017027066.1 | 6.5% | 6.4% | 261A>C;377_378delGA;386_5817delinsT |
| 20 | human | 5802 | PTPRS | protein tyrosine phosphatas... | XM_017027067.1 | 6.5% | 6.4% | 261A>C;377_378delGA;386_5817delinsT |
| 21 | human | 5802 | PTPRS | protein tyrosine phosphatas... | NM_002850.4 | 6.5% | 6.4% | 261A>C;377_378delGA;386_5844delinsT |
| 22 | mouse | 19280 | Ptprs | protein tyrosine phosphatas... | NM_001252455.1 | 7.1% | 7.5% | (many diffs) |
| 23 | mouse | 19280 | Ptprs | protein tyrosine phosphatas... | NM_001252453.1 | 7.1% | 7.5% | (many diffs) |
| 24 | mouse | 19280 | Ptprs | protein tyrosine phosphatas... | NM_001252456.1 | 7.1% | 7.5% | (many diffs) |
| 25 | mouse | 19280 | Ptprs | protein tyrosine phosphatas... | XM_006523881.1 | 7% | 7.5% | (many diffs) |
| 26 | mouse | 19280 | Ptprs | protein tyrosine phosphatas... | XM_006523880.2 | 5.7% | 6% | (many diffs) |
| 27 | mouse | 19280 | Ptprs | protein tyrosine phosphatas... | XM_006523879.2 | 5.7% | 6% | (many diffs) |
| 28 | mouse | 19280 | Ptprs | protein tyrosine phosphatas... | XM_006523878.2 | 5.6% | 6% | (many diffs) |
| 29 | mouse | 19280 | Ptprs | protein tyrosine phosphatas... | NM_011218.2 | 5.5% | 5.9% | (many diffs) |
| 30 | mouse | 19280 | Ptprs | protein tyrosine phosphatas... | XM_006523877.2 | 5.5% | 5.9% | (many diffs) |
| 31 | mouse | 19280 | Ptprs | protein tyrosine phosphatas... | XM_006523876.2 | 5.5% | 5.8% | (many diffs) |
| 32 | mouse | 19280 | Ptprs | protein tyrosine phosphatas... | XM_006523874.1 | 5.5% | 5.8% | (many diffs) |
| 33 | mouse | 19280 | Ptprs | protein tyrosine phosphatas... | XM_006523875.3 | 5.5% | 5.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 450
- ORF length:
- 384
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GCCCACCTGG GGCCCTGGCA TGGTGTCTGT GGTTGGTCCC ATGGGCCTCC 121 TTGTGGTCCT GCTCGTTGGA GGCTGTGCAG CAGAAGAGCC CCCCAGGTTT ATCAAAGAAC 181 CCAAGGACCA GATCGGCGTG TCGGGGGGTG TGGCCTCTTT CGTGTGTCAG GCCACGGGTG 241 ACCCCAAGCC ACGAGTGACC TGGAACAAGA AGGGCAAGAA GGTCAACTCT CAGCGCTTTG 301 AGACGATTGA GTTTGATGAG AGTGCCGGGG CAGTGCTGAG GATCCAGCCG CTGAGGACAC 361 CGCGGGATGA AAACGTGTAC GAGTGTGTGG CCCAGAACTC GGTTGGGGAG ATCACAGTCC 421 ATGCCAAGCT TACTGTCCTC CGAGGACCTT GCCCAACTTT CTTGTACAAA GTtggcatta 481 taagaaagca ttgcttatca atttgttgca acgaac