Construct: ORF ccsbBroadEn_11082

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007270.1_s300c1, BRDN0000395111
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PZP (5858)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5858 PZP PZP alpha-2-macroglobulin like XM_024449111.1 99.8% 99.9% (many diffs)
2 human 5858 PZP PZP alpha-2-macroglobulin like XM_017019765.1 87.9% 86.7% (many diffs)
3 human 5858 PZP PZP alpha-2-macroglobulin like NM_002864.3 84.7% 84.9% (many diffs)
4 human 5858 PZP PZP alpha-2-macroglobulin like XM_017019764.1 83.9% 84.1% (many diffs)
5 human 5858 PZP PZP alpha-2-macroglobulin like XM_011520804.2 83.1% 82% (many diffs)
6 human 5858 PZP PZP alpha-2-macroglobulin like XM_017019763.1 83.1% 82% (many diffs)
7 human 5858 PZP PZP alpha-2-macroglobulin like XM_011520805.2 83% 81.9% (many diffs)
8 human 5858 PZP PZP alpha-2-macroglobulin like XM_011520806.1 55.4% 55.5% (many diffs)
9 human 5858 PZP PZP alpha-2-macroglobulin like XM_017019767.1 54.1% 47.9% (many diffs)
10 human 5858 PZP PZP alpha-2-macroglobulin like XM_011520807.2 49.3% 49.3% (many diffs)
11 human 5858 PZP PZP alpha-2-macroglobulin like XR_001748834.1 48.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
3873
ORF length:
3804
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GTCTGAATCT TATCGGAGAA CTACTTTTCC AGTAAGATTC CGTGTTGTCT
121CCGTGGATGA AAATTTTCGC CCTCGAAATG AACTGATTCC ACTGATATAC CTTGAGAACC
181CAAGAAGAAA TCGAATTGCA CAATGGCAGA GTCTCAAGCT AGAAGCTGGC ATCAATCAGT
241TGTCCTTTCC CCTCTCATCA GAGCCCATTC AGGGCTCCTA CAGGGTGGTG GTACAGACAG
301AATCAGGTGG AAGGATACAG CACCCCTTCA CCGTGGAGGA ATTTGTGCTT CCCAAGTTTG
361AGGTCAAAGT TCAGGTGCCA AAGATAATCA GTATCATGGA TGAAAAAGTG AACATAACAG
421TCTGTGGAGA ATACACTTAT GGGAAGCCTG TCCCAGGACT TGCAACTGTG AGCCTGTGTA
481GAAAATTATC TCGTGTTCTT AATTGTGACA AGCAGGAGGT CTGTGAGGAA TTCAGTCAAC
541AGCTTAACAG CAATGGCTGC ATCACCCAAC AAGTACACAC CAAAATGCTC CAGATTACAA
601ATACGGGCTT TGAAATGAAG CTTAGAGTGG AAGCCAGGAT CAGAGAAGAG GGGACAGACC
661TGGAAGTCAC TGCAAACAGG ATCAGTGAAA TCACAAACAT TGTATCCAAA CTCAAATTCG
721TGAAAGTGGA TTCACACTTT AGACAAGGAA TCCCCTTTTT TGCACAGGTG CTTCTGGTGG
781ATGGAAAAGG TGTGCCCATC CCCAATAAAC TCTTCTTCAT CTCTGTGAAT GACGCCAATT
841ATTACTCCAA TGCAACCACC AATGAGCAGG GTCTTGCACA GTTTTCAATC AATACTACCA
901GTATCTCGGT TAATAAACTT TTTGTCCGGG TTTTCACTGT GCATCCCAAC TTGTGTTTTC
961ACTATTCATG GGTAGCAGAA GACCACCAGG GCGCTCAGCA CACTGCAAAT CGTGTTTTCT
1021CCTTAAGTGG AAGTTACATT CACCTGGAGC CTGTGGCTGG TACCCTGCCC TGTGGCCACA
1081CGGAGACTAT CACGGCACAC TATACACTGA ATAGACAGGC CATGGGAGAG TTATCGGAGC
1141TCAGTTTCCA TTACCTGATC ATGGCTAAGG GAGTCATCGT CAGATCTGGA ACCCACACTC
1201TGCCTGTGGA GTCAGGAGAC ATGAAAGGCA GTTTTGCCTT ATCCTTCCCT GTGGAGTCAG
1261ACGTTGCCCC CATTGCACGA ATGTTCATCT TTGCCATTTT ACCAGATGGA GAAGTTGTTG
1321GAGACTCTGA AAAATTTGAG ATTGAAAACT GTCTAGCCAA CAAGGTGGAT TTGAGCTTCA
1381GCCCAGCACA AAGTCCCCCA GCCTCACATG CCCACCTGCA AGTAGCAGCT GCTCCGCAGT
1441CCCTCTGTGC CCTTCGTGCT GTGGACCAAA GTGTGCTGCT CATGAAGCCT GAGGCTGAGC
1501TCTCTGTGTC CTCAGTATAT AATCTGCTAA CTGTGAAGGA TCTCACCAAT TTTCCTGACA
1561ATGTGGACCA GCAGGAGGAA GAACAAGGAC ACTGTCCCCG TCCTTTCTTC ATTCATAATG
1621GAGCCATCTA TGTTCCCTTA TCAAGTAATG AAGCAGATAT TTATAGCTTC CTCAAGGGGA
1681TGGGATTGAA GGTGTTCACT AACTCAAAAA TCCGAAAACC AAAGTCGTGT TCAGTCATCC
1741CTTCCGTGTC TGCAGGAGCA GTAGGTCAAG GATACTATGG AGCAGGTCTA GGAGTAGTAG
1801AGAGACCATA TGTTCCTCAA TTAGGCACAT ATAATGTGAT ACCCTTAAAT AATGAACAAA
1861GTTCAGGGCC AGTCCCTGAA ACGGTGCGAA GCTATTTTCC TGAGACTTGG ATCTGGGAGT
1921TGGTGGCAGT GAACTCATCA GGTGTGGCTG AGGTAGGAGT AACAGTCCCT GACACCATCA
1981CCGAGTGGAA GGCAGGGGCC TTCTGCCTGT CTGAAGATGC TGGACTTGGT ATCTCTTCCA
2041CTGCCTCTCT CCGAGCCTTC CAGCCCTTCT TTGTGGAGCT CACAATGCCT TACTCTGTGA
2101TTCGTGGAGA GGTCTTCACA CTCAAGGCCA CGGTCCTAAA CTACCTTCCC AAATGCATCC
2161GGGCTGAAGG TATTGAGCAA GAAAAGACTT TCAGTTCCAT GACCTGTGCC TCAGGTGCTA
2221ATGTGTCTGA GCAGTTGTCC TTGAAGCTCC CATCAAATGT GGTCAAAGAA TCTGCCAGAG
2281CTTCTTTCTC AGTTCTGGGT GACATATTAG GTTCTGCTAT GCAAAATATA CAAAATCTCC
2341TCCAGATGCC ATATGGCTGT GGAGAACAGA ACATGGTCCT ATTTGCTCCT AACATCTATG
2401TCTTGAACTA TCTGAATGAA ACCCAGCAGC TGACGCAGGA GATCAAGGCC AAGGCCGTTG
2461GCTATCTCAT CACTGGTTAC CAGAGACAGC TGAACTACAA ACACCAAGAT GGCTCCTACA
2521GCACCTTTGG GGAACGATAT GGCAGGAACC AGGGCAACAC TTGGCTCACA GCTTTTGTAC
2581TGAAGACTTT CGCCCAGGCT CGATCCTACA TCTTCATTGA TGAAGCACAC ATTACCCAAT
2641CTCTCACGTG GCTCTCCCAG ATGCAGAAGG ACAATGGCTG TTTCAGGAGC TCTGGGTCAC
2701TGCTCAACAA TGCCATAAAG GGAGGTGTAG AAGATGAAGC GACCCTCTCC GCCTATGTTA
2761CTATTGCCCT TCTGGAAATT CCTCTCCCAG TCACTAACCC TATTGTTCGC AATGCCCTGT
2821TCTGCCTGGA GTCAGCCTGG AATGTAGCAA AGGAGGGGAC CCATGGGAGC CATGTCTACA
2881CCAAGGCATT GCTGGCCTAT GCTTTTTCCC TACTGGGAAA GCAAAATCAG AATAGAGAAA
2941TACTGAACTC ACTTGATAAG GAAGCTGTGA AAGAAGACAA CCTCGTCCAT TGGGAGCGCC
3001CTCAGAGACC CAAGGCACCA GTGGGGCATC TTTACCAACC CCAGGCTCCC TCTGCTGAGG
3061TGGAGATGAC ATCCTATGTG CTCCTCGCTT ATCTCACGGC CCAGCCAGCC CCCACCTCAG
3121GGGACCTGAC CTCTGCAACT AACATTGTGA AGTGGATCAT GAAGCAGCAG AACGCCCAAG
3181GTGGTTTCTC CTCCACCCAG GACACAGTGG TGGCTCTCCA TGCCCTGTCC AGGTATGGAG
3241CAGCCACTTT CACCAGAACT GAGAAAACTG CACAGGTCAC CGTTCAGGAT TCACAGACCT
3301TTTCTACAAA TTTCCAAGTA GACAACAACA ACCTCCTATT ACTGCAGCAG ATCTCATTGC
3361CAGAGCTCCC TGGAGAATAT GTCATAACAG TAACTGGGGA AAGATGTGTG TATCTTCAGA
3421CATCCATGAA ATACAATATT CTTCCAGAGA AAGAGGACTC CCCATTTGCT TTAAAAGTGC
3481AGACTGTGCC CCAGACTTGC GATGGACACA AAGCCCACAC CAGCTTTCAG ATCTCACTGA
3541CCATCAGTTA CACAGGAAAC CGTCCTGCTT CCAATATGGT GATTGTTGAT GTAAAGATGG
3601TATCTGGTTT TATTCCCCTG AAACCAACAG TAAAAATGCT TGAAAGATCT AGCTCTGTGA
3661GCCGGACAGA AGTGAGCAAC AACCATGTCC TCATTTATGT GGAACAGGTG ACAAATCAGA
3721CGCTAAGTTT TTCCTTCATG GTTCTGCAAG ACATCCCAGT AGGAGACTTG AAGCCAGCAA
3781TTGTTAAAGT CTATGATTAC TATGAGACAG ATGAGTCTGT GGTTGCTGAG TATATCGCCC
3841CCTGCAGCAC AGATACAGAG CATGGAAATG TTTTGCCAAC TTTCTTGTAC AAAGTtggca
3901ttataagaaa gcattgctta tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)

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