Construct: ORF ccsbBroadEn_11082
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007270.1_s300c1, BRDN0000395111
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PZP (5858)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 5858 | PZP | PZP alpha-2-macroglobulin like | XM_024449111.1 | 99.8% | 99.9% | (many diffs) |
| 2 | human | 5858 | PZP | PZP alpha-2-macroglobulin like | XM_017019765.1 | 87.9% | 86.7% | (many diffs) |
| 3 | human | 5858 | PZP | PZP alpha-2-macroglobulin like | NM_002864.3 | 84.7% | 84.9% | (many diffs) |
| 4 | human | 5858 | PZP | PZP alpha-2-macroglobulin like | XM_017019764.1 | 83.9% | 84.1% | (many diffs) |
| 5 | human | 5858 | PZP | PZP alpha-2-macroglobulin like | XM_011520804.2 | 83.1% | 82% | (many diffs) |
| 6 | human | 5858 | PZP | PZP alpha-2-macroglobulin like | XM_017019763.1 | 83.1% | 82% | (many diffs) |
| 7 | human | 5858 | PZP | PZP alpha-2-macroglobulin like | XM_011520805.2 | 83% | 81.9% | (many diffs) |
| 8 | human | 5858 | PZP | PZP alpha-2-macroglobulin like | XM_011520806.1 | 55.4% | 55.5% | (many diffs) |
| 9 | human | 5858 | PZP | PZP alpha-2-macroglobulin like | XM_017019767.1 | 54.1% | 47.9% | (many diffs) |
| 10 | human | 5858 | PZP | PZP alpha-2-macroglobulin like | XM_011520807.2 | 49.3% | 49.3% | (many diffs) |
| 11 | human | 5858 | PZP | PZP alpha-2-macroglobulin like | XR_001748834.1 | 48.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 3873
- ORF length:
- 3804
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTCTGAATCT TATCGGAGAA CTACTTTTCC AGTAAGATTC CGTGTTGTCT 121 CCGTGGATGA AAATTTTCGC CCTCGAAATG AACTGATTCC ACTGATATAC CTTGAGAACC 181 CAAGAAGAAA TCGAATTGCA CAATGGCAGA GTCTCAAGCT AGAAGCTGGC ATCAATCAGT 241 TGTCCTTTCC CCTCTCATCA GAGCCCATTC AGGGCTCCTA CAGGGTGGTG GTACAGACAG 301 AATCAGGTGG AAGGATACAG CACCCCTTCA CCGTGGAGGA ATTTGTGCTT CCCAAGTTTG 361 AGGTCAAAGT TCAGGTGCCA AAGATAATCA GTATCATGGA TGAAAAAGTG AACATAACAG 421 TCTGTGGAGA ATACACTTAT GGGAAGCCTG TCCCAGGACT TGCAACTGTG AGCCTGTGTA 481 GAAAATTATC TCGTGTTCTT AATTGTGACA AGCAGGAGGT CTGTGAGGAA TTCAGTCAAC 541 AGCTTAACAG CAATGGCTGC ATCACCCAAC AAGTACACAC CAAAATGCTC CAGATTACAA 601 ATACGGGCTT TGAAATGAAG CTTAGAGTGG AAGCCAGGAT CAGAGAAGAG GGGACAGACC 661 TGGAAGTCAC TGCAAACAGG ATCAGTGAAA TCACAAACAT TGTATCCAAA CTCAAATTCG 721 TGAAAGTGGA TTCACACTTT AGACAAGGAA TCCCCTTTTT TGCACAGGTG CTTCTGGTGG 781 ATGGAAAAGG TGTGCCCATC CCCAATAAAC TCTTCTTCAT CTCTGTGAAT GACGCCAATT 841 ATTACTCCAA TGCAACCACC AATGAGCAGG GTCTTGCACA GTTTTCAATC AATACTACCA 901 GTATCTCGGT TAATAAACTT TTTGTCCGGG TTTTCACTGT GCATCCCAAC TTGTGTTTTC 961 ACTATTCATG GGTAGCAGAA GACCACCAGG GCGCTCAGCA CACTGCAAAT CGTGTTTTCT 1021 CCTTAAGTGG AAGTTACATT CACCTGGAGC CTGTGGCTGG TACCCTGCCC TGTGGCCACA 1081 CGGAGACTAT CACGGCACAC TATACACTGA ATAGACAGGC CATGGGAGAG TTATCGGAGC 1141 TCAGTTTCCA TTACCTGATC ATGGCTAAGG GAGTCATCGT CAGATCTGGA ACCCACACTC 1201 TGCCTGTGGA GTCAGGAGAC ATGAAAGGCA GTTTTGCCTT ATCCTTCCCT GTGGAGTCAG 1261 ACGTTGCCCC CATTGCACGA ATGTTCATCT TTGCCATTTT ACCAGATGGA GAAGTTGTTG 1321 GAGACTCTGA AAAATTTGAG ATTGAAAACT GTCTAGCCAA CAAGGTGGAT TTGAGCTTCA 1381 GCCCAGCACA AAGTCCCCCA GCCTCACATG CCCACCTGCA AGTAGCAGCT GCTCCGCAGT 1441 CCCTCTGTGC CCTTCGTGCT GTGGACCAAA GTGTGCTGCT CATGAAGCCT GAGGCTGAGC 1501 TCTCTGTGTC CTCAGTATAT AATCTGCTAA CTGTGAAGGA TCTCACCAAT TTTCCTGACA 1561 ATGTGGACCA GCAGGAGGAA GAACAAGGAC ACTGTCCCCG TCCTTTCTTC ATTCATAATG 1621 GAGCCATCTA TGTTCCCTTA TCAAGTAATG AAGCAGATAT TTATAGCTTC CTCAAGGGGA 1681 TGGGATTGAA GGTGTTCACT AACTCAAAAA TCCGAAAACC AAAGTCGTGT TCAGTCATCC 1741 CTTCCGTGTC TGCAGGAGCA GTAGGTCAAG GATACTATGG AGCAGGTCTA GGAGTAGTAG 1801 AGAGACCATA TGTTCCTCAA TTAGGCACAT ATAATGTGAT ACCCTTAAAT AATGAACAAA 1861 GTTCAGGGCC AGTCCCTGAA ACGGTGCGAA GCTATTTTCC TGAGACTTGG ATCTGGGAGT 1921 TGGTGGCAGT GAACTCATCA GGTGTGGCTG AGGTAGGAGT AACAGTCCCT GACACCATCA 1981 CCGAGTGGAA GGCAGGGGCC TTCTGCCTGT CTGAAGATGC TGGACTTGGT ATCTCTTCCA 2041 CTGCCTCTCT CCGAGCCTTC CAGCCCTTCT TTGTGGAGCT CACAATGCCT TACTCTGTGA 2101 TTCGTGGAGA GGTCTTCACA CTCAAGGCCA CGGTCCTAAA CTACCTTCCC AAATGCATCC 2161 GGGCTGAAGG TATTGAGCAA GAAAAGACTT TCAGTTCCAT GACCTGTGCC TCAGGTGCTA 2221 ATGTGTCTGA GCAGTTGTCC TTGAAGCTCC CATCAAATGT GGTCAAAGAA TCTGCCAGAG 2281 CTTCTTTCTC AGTTCTGGGT GACATATTAG GTTCTGCTAT GCAAAATATA CAAAATCTCC 2341 TCCAGATGCC ATATGGCTGT GGAGAACAGA ACATGGTCCT ATTTGCTCCT AACATCTATG 2401 TCTTGAACTA TCTGAATGAA ACCCAGCAGC TGACGCAGGA GATCAAGGCC AAGGCCGTTG 2461 GCTATCTCAT CACTGGTTAC CAGAGACAGC TGAACTACAA ACACCAAGAT GGCTCCTACA 2521 GCACCTTTGG GGAACGATAT GGCAGGAACC AGGGCAACAC TTGGCTCACA GCTTTTGTAC 2581 TGAAGACTTT CGCCCAGGCT CGATCCTACA TCTTCATTGA TGAAGCACAC ATTACCCAAT 2641 CTCTCACGTG GCTCTCCCAG ATGCAGAAGG ACAATGGCTG TTTCAGGAGC TCTGGGTCAC 2701 TGCTCAACAA TGCCATAAAG GGAGGTGTAG AAGATGAAGC GACCCTCTCC GCCTATGTTA 2761 CTATTGCCCT TCTGGAAATT CCTCTCCCAG TCACTAACCC TATTGTTCGC AATGCCCTGT 2821 TCTGCCTGGA GTCAGCCTGG AATGTAGCAA AGGAGGGGAC CCATGGGAGC CATGTCTACA 2881 CCAAGGCATT GCTGGCCTAT GCTTTTTCCC TACTGGGAAA GCAAAATCAG AATAGAGAAA 2941 TACTGAACTC ACTTGATAAG GAAGCTGTGA AAGAAGACAA CCTCGTCCAT TGGGAGCGCC 3001 CTCAGAGACC CAAGGCACCA GTGGGGCATC TTTACCAACC CCAGGCTCCC TCTGCTGAGG 3061 TGGAGATGAC ATCCTATGTG CTCCTCGCTT ATCTCACGGC CCAGCCAGCC CCCACCTCAG 3121 GGGACCTGAC CTCTGCAACT AACATTGTGA AGTGGATCAT GAAGCAGCAG AACGCCCAAG 3181 GTGGTTTCTC CTCCACCCAG GACACAGTGG TGGCTCTCCA TGCCCTGTCC AGGTATGGAG 3241 CAGCCACTTT CACCAGAACT GAGAAAACTG CACAGGTCAC CGTTCAGGAT TCACAGACCT 3301 TTTCTACAAA TTTCCAAGTA GACAACAACA ACCTCCTATT ACTGCAGCAG ATCTCATTGC 3361 CAGAGCTCCC TGGAGAATAT GTCATAACAG TAACTGGGGA AAGATGTGTG TATCTTCAGA 3421 CATCCATGAA ATACAATATT CTTCCAGAGA AAGAGGACTC CCCATTTGCT TTAAAAGTGC 3481 AGACTGTGCC CCAGACTTGC GATGGACACA AAGCCCACAC CAGCTTTCAG ATCTCACTGA 3541 CCATCAGTTA CACAGGAAAC CGTCCTGCTT CCAATATGGT GATTGTTGAT GTAAAGATGG 3601 TATCTGGTTT TATTCCCCTG AAACCAACAG TAAAAATGCT TGAAAGATCT AGCTCTGTGA 3661 GCCGGACAGA AGTGAGCAAC AACCATGTCC TCATTTATGT GGAACAGGTG ACAAATCAGA 3721 CGCTAAGTTT TTCCTTCATG GTTCTGCAAG ACATCCCAGT AGGAGACTTG AAGCCAGCAA 3781 TTGTTAAAGT CTATGATTAC TATGAGACAG ATGAGTCTGT GGTTGCTGAG TATATCGCCC 3841 CCTGCAGCAC AGATACAGAG CATGGAAATG TTTTGCCAAC TTTCTTGTAC AAAGTtggca 3901 ttataagaaa gcattgctta tcaatttgtt gcaacgaac