Construct: ORF ccsbBroadEn_11141
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016455.1_s300c1, BRDN0000456293
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLCO1A2 (6579)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6579 | SLCO1A2 | solute carrier organic anio... | XM_017019850.1 | 70.4% | 70.4% | (many diffs) |
| 2 | human | 6579 | SLCO1A2 | solute carrier organic anio... | XM_017019849.1 | 68% | 68% | (many diffs) |
| 3 | human | 6579 | SLCO1A2 | solute carrier organic anio... | XM_005253477.3 | 62.6% | 62.6% | (many diffs) |
| 4 | human | 6579 | SLCO1A2 | solute carrier organic anio... | XM_011520820.3 | 60.9% | 60.9% | (many diffs) |
| 5 | human | 6579 | SLCO1A2 | solute carrier organic anio... | NM_021094.4 | 60.7% | 60.7% | (many diffs) |
| 6 | human | 6579 | SLCO1A2 | solute carrier organic anio... | NM_134431.3 | 60.7% | 60.7% | (many diffs) |
| 7 | human | 6579 | SLCO1A2 | solute carrier organic anio... | XM_005253474.3 | 60.7% | 60.7% | (many diffs) |
| 8 | human | 6579 | SLCO1A2 | solute carrier organic anio... | XM_011520818.1 | 60.7% | 60.7% | (many diffs) |
| 9 | human | 6579 | SLCO1A2 | solute carrier organic anio... | XM_011520819.1 | 60.7% | 60.7% | (many diffs) |
| 10 | human | 6579 | SLCO1A2 | solute carrier organic anio... | XM_024449138.1 | 60.7% | 60.7% | (many diffs) |
| 11 | human | 6579 | SLCO1A2 | solute carrier organic anio... | XM_024449139.1 | 60.7% | 60.7% | (many diffs) |
| 12 | human | 6579 | SLCO1A2 | solute carrier organic anio... | XM_011520821.2 | 18.3% | 18.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1293
- ORF length:
- 1224
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTTTCTGTTG GCAATAACAT GTGCATTTGT ATCCAAAACA CTGTCTGGAT 121 CTTATATGAA TTCCATGCTC ACACAAATAG AGAGACAATT CAACATCCCA ACATCTCTAG 181 TTGGATTCAT TAATGGAAGC TTTGAGATTG GAAATCTTTT GTTGATTATA TTTGTGAGTT 241 ATTTTGGAAC CAAACTGCAT AGACCTATAA TGATTGGCAT TGGATGTGTG GTTATGGGCT 301 TAGGCTGTTT CTTAAAATCA CTACCTCATT TCCTCATGAA CCAATATGAA TATGAATCTA 361 CAGTTTCAGT TTCAGGCAAC TTGTCCTCAA ACAGTTTCTT GTGTATGGAA AATGGAACCC 421 AGATTTTAAG ACCAACGCAG GATCCATCAG AGTGTACAAA GGAAGTTAAA TCATTAATGT 481 GGGTGTACGT CCTAGTAGGC AATATTGTAC GTGGAATGGG TGAAACTCCC ATCCTGCCTT 541 TGGGTATTTC CTATATAGAA GATTTTGCCA AATTTGAAAA TTCTCCTTTA TATATTGGGC 601 TTGTAGAAAC AGGAGCTATT ATTGGTCCTT TGATTGGACT TTTGTTGGCA TCATTCTGTG 661 CAAATGTTTA TGTTGACACT GGATTTGTGA ACACAGATGA TCTGATCATA ACTCCCACTG 721 ACACTCGTTG GGTCGGTGCA TGGTGGTTTG GCTTTCTGAT TTGTGCAGGA GTTAACGTGC 781 TCACTGCCAT TCCTTTTTTC TTTTTGCCCA ACACACTTCC AAAGGAAGGA CTAGAGACTA 841 ATGCTGACAT CATTAAAAAT GAAAATGAAG ACAAACAAAA AGAAGAGGTC AAGAAGGAAA 901 AATATGGAAT CACTAAAGAT TTTCTACCTT TCATGAAAAG TCTTTCCTGC AATCCAATTT 961 ATATGCTTTT CATACTTGTA AGTGTGATAC AGTTCAATGC ATTCGTTAAC ATGATCTCCT 1021 TCATGCCTAA ATACCTAGAA CAGCAATATG GAATATCATC TTCAGATGCA ATCTTTCTAA 1081 TGGGTATTTA TAACTTACCT CCAATATGTA TTGGATATAT AATTGGTGGT TTAATTATGA 1141 AGAAGTTCAA GATTACTGTC AAACAAGCTG CCCACATAGG ATGTTGGTTA TCCTTACTTG 1201 AGTATCTTCT CTATTTTTTA TCTTTTCTCA TGACTTGTGA AAATTCTTCA GTTGTTGGAA 1261 TAAATACCTC TTATGAAGGG TATGTTGTTT TCTTGCCAAC TTTCTTGTAC AAAGTTGGca 1321 ttataagaaa gcattgctta tcaatttgtt gcaacgaac