Construct: ORF ccsbBroadEn_11141

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016455.1_s300c1, BRDN0000456293
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLCO1A2 (6579)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6579 SLCO1A2 solute carrier organic anio... XM_017019850.1 70.4% 70.4% (many diffs)
2 human 6579 SLCO1A2 solute carrier organic anio... XM_017019849.1 68% 68% (many diffs)
3 human 6579 SLCO1A2 solute carrier organic anio... XM_005253477.3 62.6% 62.6% (many diffs)
4 human 6579 SLCO1A2 solute carrier organic anio... XM_011520820.3 60.9% 60.9% (many diffs)
5 human 6579 SLCO1A2 solute carrier organic anio... NM_021094.4 60.7% 60.7% (many diffs)
6 human 6579 SLCO1A2 solute carrier organic anio... NM_134431.3 60.7% 60.7% (many diffs)
7 human 6579 SLCO1A2 solute carrier organic anio... XM_005253474.3 60.7% 60.7% (many diffs)
8 human 6579 SLCO1A2 solute carrier organic anio... XM_011520818.1 60.7% 60.7% (many diffs)
9 human 6579 SLCO1A2 solute carrier organic anio... XM_011520819.1 60.7% 60.7% (many diffs)
10 human 6579 SLCO1A2 solute carrier organic anio... XM_024449138.1 60.7% 60.7% (many diffs)
11 human 6579 SLCO1A2 solute carrier organic anio... XM_024449139.1 60.7% 60.7% (many diffs)
12 human 6579 SLCO1A2 solute carrier organic anio... XM_011520821.2 18.3% 18.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1293
ORF length:
1224
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GTTTCTGTTG GCAATAACAT GTGCATTTGT ATCCAAAACA CTGTCTGGAT
121CTTATATGAA TTCCATGCTC ACACAAATAG AGAGACAATT CAACATCCCA ACATCTCTAG
181TTGGATTCAT TAATGGAAGC TTTGAGATTG GAAATCTTTT GTTGATTATA TTTGTGAGTT
241ATTTTGGAAC CAAACTGCAT AGACCTATAA TGATTGGCAT TGGATGTGTG GTTATGGGCT
301TAGGCTGTTT CTTAAAATCA CTACCTCATT TCCTCATGAA CCAATATGAA TATGAATCTA
361CAGTTTCAGT TTCAGGCAAC TTGTCCTCAA ACAGTTTCTT GTGTATGGAA AATGGAACCC
421AGATTTTAAG ACCAACGCAG GATCCATCAG AGTGTACAAA GGAAGTTAAA TCATTAATGT
481GGGTGTACGT CCTAGTAGGC AATATTGTAC GTGGAATGGG TGAAACTCCC ATCCTGCCTT
541TGGGTATTTC CTATATAGAA GATTTTGCCA AATTTGAAAA TTCTCCTTTA TATATTGGGC
601TTGTAGAAAC AGGAGCTATT ATTGGTCCTT TGATTGGACT TTTGTTGGCA TCATTCTGTG
661CAAATGTTTA TGTTGACACT GGATTTGTGA ACACAGATGA TCTGATCATA ACTCCCACTG
721ACACTCGTTG GGTCGGTGCA TGGTGGTTTG GCTTTCTGAT TTGTGCAGGA GTTAACGTGC
781TCACTGCCAT TCCTTTTTTC TTTTTGCCCA ACACACTTCC AAAGGAAGGA CTAGAGACTA
841ATGCTGACAT CATTAAAAAT GAAAATGAAG ACAAACAAAA AGAAGAGGTC AAGAAGGAAA
901AATATGGAAT CACTAAAGAT TTTCTACCTT TCATGAAAAG TCTTTCCTGC AATCCAATTT
961ATATGCTTTT CATACTTGTA AGTGTGATAC AGTTCAATGC ATTCGTTAAC ATGATCTCCT
1021TCATGCCTAA ATACCTAGAA CAGCAATATG GAATATCATC TTCAGATGCA ATCTTTCTAA
1081TGGGTATTTA TAACTTACCT CCAATATGTA TTGGATATAT AATTGGTGGT TTAATTATGA
1141AGAAGTTCAA GATTACTGTC AAACAAGCTG CCCACATAGG ATGTTGGTTA TCCTTACTTG
1201AGTATCTTCT CTATTTTTTA TCTTTTCTCA TGACTTGTGA AAATTCTTCA GTTGTTGGAA
1261TAAATACCTC TTATGAAGGG TATGTTGTTT TCTTGCCAAC TTTCTTGTAC AAAGTTGGca
1321ttataagaaa gcattgctta tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)

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