Construct: ORF ccsbBroadEn_11147

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012454.1_s300c1, BRDN0000388321
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SNAPC3 (6619)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6619 SNAPC3 small nuclear RNA activatin... NM_001369651.2 74.7% 74.5% 758A>T;760_1014del
2 human 6619 SNAPC3 small nuclear RNA activatin... NM_001369650.2 70.9% 70.7% 758A>T;760_1068del
3 human 6619 SNAPC3 small nuclear RNA activatin... NM_001369648.2 67.5% 67.3% 758A>T;760_1122del
4 human 6619 SNAPC3 small nuclear RNA activatin... NM_001369647.2 65.3% 63% (many diffs)
5 human 6619 SNAPC3 small nuclear RNA activatin... NM_001369649.2 63.5% 49.1% (many diffs)
6 human 6619 SNAPC3 small nuclear RNA activatin... NM_001039697.1 61.4% 61.3% 758A>T;760_1233del
7 human 6619 SNAPC3 small nuclear RNA activatin... XM_017015056.2 61.4% 61.3% 758A>T;760_1233del
8 human 6619 SNAPC3 small nuclear RNA activatin... NR_161441.1 28.4% (many diffs)
9 human 6619 SNAPC3 small nuclear RNA activatin... NR_161445.1 26.3% 1_4delGAAC;762A>T;764_2878del
10 human 6619 SNAPC3 small nuclear RNA activatin... NR_161433.2 23.5% 1_4delGAAC;762A>T;764_3214del
11 human 6619 SNAPC3 small nuclear RNA activatin... NR_161449.2 14.2% (many diffs)
12 human 6619 SNAPC3 small nuclear RNA activatin... NR_161442.2 14.1% (many diffs)
13 human 6619 SNAPC3 small nuclear RNA activatin... NR_161448.2 13.8% (many diffs)
14 human 6619 SNAPC3 small nuclear RNA activatin... NR_161446.2 13.7% (many diffs)
15 human 6619 SNAPC3 small nuclear RNA activatin... NR_161436.2 13.1% (many diffs)
16 human 6619 SNAPC3 small nuclear RNA activatin... NR_161440.2 11.4% (many diffs)
17 human 6619 SNAPC3 small nuclear RNA activatin... NR_161450.2 11.4% (many diffs)
18 human 6619 SNAPC3 small nuclear RNA activatin... NR_161439.2 11.4% 1_4delGAAC;762A>T;764_6627del
19 human 6619 SNAPC3 small nuclear RNA activatin... NR_161438.2 11.2% (many diffs)
20 human 6619 SNAPC3 small nuclear RNA activatin... NR_161444.2 11.2% (many diffs)
21 human 6619 SNAPC3 small nuclear RNA activatin... NR_161435.2 11.1% 1_4delGAAC;762A>T;764_6792del
22 human 6619 SNAPC3 small nuclear RNA activatin... NR_161447.2 11.1% (many diffs)
23 human 6619 SNAPC3 small nuclear RNA activatin... NR_161443.2 10.6% (many diffs)
24 human 6619 SNAPC3 small nuclear RNA activatin... NR_161437.2 10.5% (many diffs)
25 human 6619 SNAPC3 small nuclear RNA activatin... NR_161434.2 9.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
825
ORF length:
759
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC TGAAGGAAGC CGAGGTGGCC CTACGTGTAG CGGGGTGGGT GGCAGGCAGG
121ACCCAGTCTC CGGCAGTGGC GGCTGCAACT TTCCAGAGTA TGAGCTTCCC GAGCTAAATA
181CGCGCGCTTT CCATGTGGGC GCCTTTGGGG AGCTGTGGCG GGGCCGTCTG CGCGGGGCCG
241GGGACTTGTC GCTGAGGGAG CCGCCGGCAT CCGCTCTGCC TGGGAGCCAG GCAGCTGACT
301CCGACCGGGA GGATGCCGCG GTGGCCAGGG ATCTGGACTG CAGCCTGGAG GCGGCGGCTG
361AGCTGAGGGC GGTGTGCGGC CTTGATAAAC TGAAATGCCT TGAGGACGGT GAGGATCCAG
421AAGTCATTCC GGAGAATACT GACCTGGTGA CTTTGGGGGT TAGAAAAAGG TTCTTGGAAC
481ATCGGGAAGA AACCATTACA ATAGATCGAG CCTGCAGACA AGAAACATTC GTTTATGAGA
541TGGAGTCACA TGCCATAGGA AAAAAGCCTG AAAATTCAGC AGACATGATT GAAGAAGGGG
601AGCTTATCCT ATCTGTGAAT ATCTTGTACC CTGTTATATT TCATAAGCAC AAAGAACACA
661AACCATACCA AACAATGCTG GTGTTGGGCA GTCAAAAACT CACACAACTG AGGGATTCAA
721TTCGATGTGT CAGTGACCTC CAGATTGGTG GTGAATTCAG CAACACTCCT GACCAAGCCC
781CTGAGCACAT CAGCAAAGAC CTATACAAAT CAGCCTTCTT TTTTTGCCCA ACTTTCTTGT
841ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)