Construct: ORF ccsbBroadEn_11152

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016335.1_s300c1, BRDN0000392856
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SP100 (6672)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6672 SP100 SP100 nuclear antigen NM_001206702.1 99.9% 100% 1257G>A
2 human 6672 SP100 SP100 nuclear antigen NM_001206703.1 94% 94.1% 30_31ins75;1182G>A;1206_1207insGGTGAGAAG
3 human 6672 SP100 SP100 nuclear antigen NM_001206704.1 92.5% 92.5% 0_1ins105;2T>G;1152G>A
4 human 6672 SP100 SP100 nuclear antigen NM_001206701.2 69.5% 69.3% (many diffs)
5 human 6672 SP100 SP100 nuclear antigen NM_003113.4 54.4% 54.2% (many diffs)
6 human 6672 SP100 SP100 nuclear antigen NM_001080391.2 54% 53.8% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1506
ORF length:
1440
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC AGGTGGGGGC GGCGACCTGA GCACCAGGAG GCTGAATGAA TGTATTTCAC
121CAGTAGCAAA TGAGATGAAC CATCTTCCTG CACACAGCCA CGATTTGCAA AGGATGTTCA
181CGGAAGACCA GGGTGTAGAT GACAGGCTGC TCTATGACAT TGTATTCAAG CACTTCAAAA
241GAAATAAGGT GGAGATTTCA AATGCAATAA AAAAGACATT TCCATTCCTC GAGGGCCTCC
301GTGATCGTGA TCTCATCACA AATAAAATGT TTGAAGATTC TCAAGATTCT TGTAGAAACC
361TGGTCCCTGT ACAGAGAGTG GTGTACAATG TTCTTAGTGA ACTGGAGAAG ACATTTAACC
421TGCCAGTTCT GGAAGCACTG TTCAGCGATG TCAACATGCA GGAATACCCC GATTTAATTC
481ACATTTATAA AGGCTTTGAA AATGTAATCC ATGACAAATT GCCTCTCCAA GAAAGTGAAG
541AAGAAGAGAG GGAGGAGAGG TCTGGCCTCC AACTAAGTCT TGAACAAGGA ACTGGTGAAA
601ACTCTTTTCG AAGCCTGACT TGGCCACCTT CGGGTTCCCC ATCTCATGCT GGTACAACCC
661CACCTGAAAA TGGACTCTCA GAGCACCCCT GTGAAACAGA ACAGATAAAT GCAAAGAGAA
721AAGATACAAC CAGTGACAAA GATGATTCGC TAGGAAGCCA ACAAACAAAT GAACAATGTG
781CTCAAAAGGC TGAGCCAACA GAGTCCTGCG AACAAATTGC TGTCCAAGTG AATAATGGGG
841ATGCTGGAAG GGAGATGCCC TGCCCGTTGC CCTGTGATGA AGAAAGCCCA GAGGCAGAGC
901TACACAACCA TGGAATCCAA ATTAATTCCT GTTCTGTGCG ACTGGTGGAT ATAAAAAAGG
961AAAAGCCATT TTCTAATTCA AAAGTTGAGT GCCAAGCCCA AGCAAGAACT CATCATAACC
1021AGGCATCTGA CATAATAGTC ATCAGCAGTG AGGACTCTGA AGGATCCACT GACGTTGATG
1081AGCCCTTAGA AGTCTTCATC TCAGCACCGA GAAGTGAGCC TGTGATCAAT AATGACAACC
1141CTTTAGAATC AAATGATGAA AAGGAGGGCC AAGAAGCCAC TTGCTCACGA CCCCAGATTG
1201TACCAGAGCC CATGGATTTC AGAAAATTAT CTACATTCAG AGAAAGTTTT AAGAAAAGAG
1261TGATAGGACA AGACCACGAC TTTTCAGAAT CCAGTGAGGA GGAGGCGCCC GCAGAAGCCT
1321CAAGCGGGGC ACTGAGAAGC AAGCATGGTG AGAAGGCTCC TATGACTTCT AGAAGTACAT
1381CTACTTGGAG AATACCCAGC AGGAAGAGAC GTTTCAGCAG TAGTGACTTT TCAGACCTGA
1441GTAATGGAGA AGAGCTTCAG GAAACCTGCA GCTCATCCCT AAGAAGAGGG TCAGGTAAAG
1501AAGATTACCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt
1561gttgcaacga ac

Download FASTA (ORF) (Full)