Transcript: Human NM_001206701.2

Homo sapiens SP100 nuclear antigen (SP100), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-05-31
Taxon:
Homo sapiens (human)
Gene:
SP100 (6672)
Length:
2263
CDS:
97..2163

Additional Resources:

NCBI RefSeq record:
NM_001206701.2
NBCI Gene record:
SP100 (6672)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001206701.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000425914 GAAGTGAGCCTGTGATCAATA pLKO_005 1142 CDS 100% 13.200 18.480 N SP100 n/a
2 TRCN0000417077 TATACGCTGCGGTGGATATAC pLKO_005 2070 CDS 100% 13.200 18.480 N SP100 n/a
3 TRCN0000019224 GCCAACACTAGACCTTTGAAA pLKO.1 1825 CDS 100% 5.625 7.875 N SP100 n/a
4 TRCN0000019226 GCACTCTATATAAGGAGCGAT pLKO.1 1937 CDS 100% 2.640 3.696 N SP100 n/a
5 TRCN0000417853 TCGTGATCTCATCACAAATAA pLKO_005 336 CDS 100% 15.000 10.500 N SP100 n/a
6 TRCN0000418404 GACAACCCTTTAGAATCAAAT pLKO_005 1165 CDS 100% 13.200 9.240 N SP100 n/a
7 TRCN0000420523 AGAGAAGGCATAGATCTAAAG pLKO_005 1703 CDS 100% 10.800 7.560 N SP100 n/a
8 TRCN0000019227 CGCTAGGAAGCCAACAAACAA pLKO.1 779 CDS 100% 5.625 3.938 N SP100 n/a
9 TRCN0000019228 GCAAGGACTGAAAGTAGTCAA pLKO.1 1606 CDS 100% 4.950 3.465 N SP100 n/a
10 TRCN0000426862 CCAAGCAAGAACTCATCATAA pLKO_005 1029 CDS 100% 13.200 7.920 N SP100 n/a
11 TRCN0000019225 GCAAATGAGATGAACCATCTT pLKO.1 157 CDS 100% 4.950 2.475 Y SP100 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001206701.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11152 pDONR223 100% 69.5% 69.3% None (many diffs) n/a
2 ccsbBroad304_11152 pLX_304 0% 69.5% 69.3% V5 (many diffs) n/a
3 TRCN0000479863 AGACGTTTCATAGCCTACAGAGGC pLX_317 28.4% 69.5% 69.3% V5 (many diffs) n/a
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