Construct: ORF ccsbBroadEn_11174
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008066.1_s300c1, BRDN0000455744
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TBXA2R (6915)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6915 | TBXA2R | thromboxane A2 receptor | NM_201636.3 | 56.6% | 33.7% | (many diffs) |
| 2 | human | 6915 | TBXA2R | thromboxane A2 receptor | NM_001060.6 | 54.8% | 39.1% | 397_785del;795C>T;1029_1030ins137 |
| 3 | human | 6915 | TBXA2R | thromboxane A2 receptor | XM_011528214.2 | 54.8% | 39.1% | 397_785del;795C>T;1029_1030ins137 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 846
- ORF length:
- 777
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACGAT GTGGCCCAAC GGCAGTTCCC TGGGGCCCTG TTTCCGGCCC ACAAACATTA 121 CCCTGGAGGA GAGACGGCTG ATCGCCTCGC CCTGGTTCGC CGCCTCCTTC TGCGTGGTGG 181 GCCTGGCCTC CAACCTGCTG GCCCTGAGCG TGCTGGCGGG CGCGCGGCAG GGGGGTTCGC 241 ACACGCGCTC CTCCTTCCTC ACCTTCCTCT GCGGCCTCGT CCTCACCGAC TTCCTGGGGC 301 TGCTGGTGAC CGGTACCATC GTGGTGTCCC AGCACGCCGC GCTCTTCGAG TGGCACGCCG 361 TGGACCCTGG CTGCCGTCTC TGTCGCTTCA TGGGCGTCGT CATGATCTTC TTCGGCCTGT 421 CCCCGCTGCT GCTGGGGGCC GCCATGGCCT CAGAGCGCTA CCTGGGTCTT CATTGCCCAG 481 ACAGTGCTGC GAAACCCGCC TGCCATGAGC CCCGCCGGGC AGCTGTCCCG CACCACGGAG 541 AAGGAGCTGC TCATCTACTT GCGCGTGGCC ACCTGGAACC AGATCCTGGA CCCCTGGGTG 601 TATATCCTGT TCCGCCGCGC CGTGCTCCGG CGTCTCCAGC CTCGCCTCAG CACCCGGCCC 661 AGGTCGCTGT CCCTCCAGCC CCAGCTCACG CAGCGCTCCG GGCTGCAGTA GGAAGTGGAC 721 AGAGCGCCCC TCCCGCGCCT TTCCGCGGAG CCCTTGGCCC CTCGGACAGC CCATCTGCCT 781 GTTCTGAGGA TTCAGGGGCT GGGGGTGCTG GATGGACAGT GGGCATCAGC AGCAGGGTTT 841 TGGGTTTGCC AACTTTCTTG TACAAAGTTG Gcattataag aaagcattgc ttatcaattt 901 gttgcaacga ac