Construct: ORF ccsbBroadEn_11196
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000214.1_s300c1, BRDN0000391231
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TNFAIP2 (7127)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7127 | TNFAIP2 | TNF alpha induced protein 2 | NM_006291.4 | 65.8% | 65.7% | 1_669del;844C>G |
| 2 | human | 7127 | TNFAIP2 | TNF alpha induced protein 2 | XM_011537114.2 | 65.8% | 65.7% | 1_669del;844C>G |
| 3 | human | 7127 | TNFAIP2 | TNF alpha induced protein 2 | NM_001371220.1 | 60.1% | 59.7% | (many diffs) |
| 4 | human | 7127 | TNFAIP2 | TNF alpha induced protein 2 | NM_001371221.1 | 60.1% | 59.7% | (many diffs) |
| 5 | human | 7127 | TNFAIP2 | TNF alpha induced protein 2 | XM_006720243.3 | 60.1% | 59.7% | (many diffs) |
| 6 | human | 7127 | TNFAIP2 | TNF alpha induced protein 2 | XM_011537112.2 | 60.1% | 59.7% | (many diffs) |
| 7 | human | 7127 | TNFAIP2 | TNF alpha induced protein 2 | XM_011537113.2 | 60.1% | 59.7% | (many diffs) |
| 8 | human | 7127 | TNFAIP2 | TNF alpha induced protein 2 | XM_017021616.1 | 60.1% | 59.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1362
- ORF length:
- 1293
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAAGGAGGAC CTGGAGGCCG TGGTGGAGCG GCTGAAGCCG CTGTTCCCCG 121 CCGAGTTCGG CGTCGTGGCG GCCTACGCCG AGAGCTACCA CCAGCACTTC GCGGCCCACC 181 TGGCCGCCGT GGCGCAGTTC GAGCTGTGCG AGCGCGACAC CTACATGCTG CTGCTCTGGG 241 TGGAGAACCT CTACCCCAAT GACATCATCA ACAGCCCCAA GCTGGTGGGT GAGCTGCAGG 301 GTATGGGGCT CGGGAGCCTC CTGCCCCCCA GGCAGATCCG ACTGCTGGAG GCCACATTCC 361 TGTCCAGTGA GGCGGCCAAT GTGAGGGAGT TGATGGACCG AGCTCTGGAG CTAGAGGCAC 421 GGCGCTGGGC TGAGGATGTG CCTCCCCAGA GGCTGGACGG CCACTGCCAC AGCGAGCTGG 481 CCATCGACAT CATCCAGATC ACCTCCCAGG CCCAGGCCAA GGCCGAGAGC ATCACGCTGG 541 ACTTGGGCTC ACAGATAAAG CGGGTGCTGC TGGTGGAGCT GCCTGCGTTC CTGAGGAGCT 601 ACCAGCGCGC CTTTAATGAA TTTCTGGAGA GAGGCAAGCA GCTGACGAAT TACAGGGCCA 661 ATGTTATTGC CAACATCAAC AACTGCCTGT CCTTCCGGAT GTCCATGGAG CAGAATTGGC 721 AGGTACCCCA GGACACCCTG AGCCTCCTGC TGGGCCCCCT GGGTGAGCTC AAGAGCCACG 781 GCTTTGACAC CCTGCTCCAG AACCTGCATG AGGACCTGAA GCCACTGTTC AAGAGGTTCA 841 CGCACACCCG CTGGGCGGCC CCTGTGGAGA CCCTGGAAAA CATCATCGCC ACTGTAGACA 901 CGAGGCTGCC TGAGTTCTCA GAGCTGCAGG GCTGTTTCCG GGAGGAGCTC ATGGAGGCCT 961 TGCACCTGCA CCTGGTGAAG GAGTACATCA TCCAACTCAG CAAGGGGCGC CTGGTCCTCA 1021 AGACGGCCGA GCAGCAGCAG CAGCTGGCTG GGTACATCCT GGCCAATGCT GACACCATCC 1081 AGCACTTCTG CACCCAGCAC GGCTCCCCGG CGACCTGGCT GCAGCCTGCT CTCCCTACGC 1141 TGGCCGAGAT CATTCGCCTG CAGGACCCCA GTGCCATCAA GATTGAGGTG GCCACTTATG 1201 CCACCTGCTA CCCTGACTTC AGCAAAGGCC ACCTGAGCGC TATCCTGGCC ATCAAGGGGA 1261 ACCTATCCAA CAGTGAGGTC AAGCGCATCC GGAGCATCTT GGACGTCAGC ATGGGGGCGC 1321 AGGAGCCCTC CCGGCCCCTA TTTTCCCTTA TAAAGGTTGG TTTGCCAACT TTCTTGTACA 1381 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac