Construct: ORF ccsbBroadEn_11224
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010310.1_s300c1, BRDN0000392287
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF2 (7549)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7549 | ZNF2 | zinc finger protein 2 | NM_001291604.2 | 84.5% | 84.3% | 1_159del;865T>C |
| 2 | human | 7549 | ZNF2 | zinc finger protein 2 | NM_001017396.3 | 76.1% | 75.9% | 1_273del;979T>C |
| 3 | human | 7549 | ZNF2 | zinc finger protein 2 | NM_001282398.2 | 75.3% | 75.1% | 1_285del;991T>C |
| 4 | human | 7549 | ZNF2 | zinc finger protein 2 | NM_021088.4 | 68.6% | 68.4% | 1_399del;1105T>C |
| 5 | human | 7549 | ZNF2 | zinc finger protein 2 | NM_001291605.2 | 66.5% | 66.4% | 1_438del;1144T>C |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 942
- ORF length:
- 876
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG AACAGAAAAG CAAAGCCCTT CAGGGGAGAC TCGTAAGAAA TCCCTCTCCC 121 GGGACAAAGG CTTGCGGCGA CGGTCAGCCC TGTCCAGGGA AATTCTCACT AAAGAGAGAC 181 ACCAGGAATG CAGTGACTGT GGGAAGACCT TTTTTGACCA CTCATCCCTC ACCCGCCATC 241 AGAGGACTCA CACTGGGGAG AAGCCCTACG ACTGCCGCGA GTGTGGGAAA GCCTTCAGCC 301 ACAGGAGCAG CCTCAGCAGA CATCTGATGT CACACACTGG GGAGAGCCCC TACGAGTGCA 361 GTGTGTGCTC AAAAGCCTTC TTTGACCGTT CGTCCCTAAC TGTCCATCAG CGAATTCACA 421 CTGGAGAGAA ACCCTTTCAG TGCAACGAGT GTGGAAAAGC CTTTTTTGAC CGTTCATCCC 481 TTACTCGACA CCAGAGAATT CACACTGGAG AAAGTCCTTA TGAATGTCAT CAGTGTGGGA 541 AAGCCTTTAG CCAGAAAAGT ATTCTTACTC GCCATCAGCT AATCCACACT GGCAGGAAGC 601 CTTATGAGTG TAACGAGTGC GGGAAAGCTT TCTATGGTGT CTCGTCTCTG AATAGACATC 661 AGAAAGCTCA TGCTGGGGAC CCTCGCTATC AGTGTAACGA GTGTGGCAAA GCTTTCTTTG 721 ACCGCTCATC CCTTACACAG CATCAGAAGA TCCACACTGG AGACAAGCCA CATGAATGCA 781 GCGAATGCGG GAAAGCCTTT AGCCAGCGGT GCCGGCTCAC GCGGCATCAG CGTGTCCACA 841 CGGGAGAGAA GCCCTTTGAA TGCACTGTGT GTGGGAAAGT TTTCAGTTCA AAATCTTCTG 901 TTATTCAACA TCAACGGCGT TACGCCAAAC AGGGAATAGA CTGCCCAACT TTCTTGTACA 961 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac