Construct: ORF ccsbBroadEn_11227
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011157.1_s300c1, BRDN0000397579
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF3 (7551)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_001278291.2 | 99.9% | 99.7% | 197T>C |
| 2 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_001278292.2 | 99.9% | 99.7% | 197T>C |
| 3 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_001362777.2 | 99.9% | 99.7% | 197T>C |
| 4 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_001371215.1 | 99.9% | 99.7% | 197T>C |
| 5 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_001371216.1 | 99.9% | 99.7% | 197T>C |
| 6 | human | 7551 | ZNF3 | zinc finger protein 3 | XM_024446925.1 | 98.7% | 98.5% | 34_48del;212T>C |
| 7 | human | 7551 | ZNF3 | zinc finger protein 3 | XM_024446926.1 | 98.7% | 98.5% | 34_48del;212T>C |
| 8 | human | 7551 | ZNF3 | zinc finger protein 3 | XM_024446927.1 | 98.7% | 98.5% | 34_48del;212T>C |
| 9 | human | 7551 | ZNF3 | zinc finger protein 3 | XM_024446928.1 | 98.7% | 98.5% | 34_48del;212T>C |
| 10 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_001278284.2 | 91.8% | 91.7% | 1_108del;305T>C |
| 11 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_001278287.2 | 91.8% | 91.7% | 1_108del;305T>C |
| 12 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_001278290.1 | 91.8% | 91.7% | 1_108del;305T>C |
| 13 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_001318135.2 | 91.8% | 91.7% | 1_108del;305T>C |
| 14 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_001371211.1 | 91.8% | 91.7% | 1_108del;305T>C |
| 15 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_001371212.1 | 91.8% | 91.7% | 1_108del;305T>C |
| 16 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_001371213.1 | 91.8% | 91.7% | 1_108del;305T>C |
| 17 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_001371214.1 | 91.8% | 91.7% | 1_108del;305T>C |
| 18 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_032924.5 | 91.8% | 91.7% | 1_108del;305T>C |
| 19 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_001362776.2 | 90.8% | 90.6% | 1_108del;142_156del;320T>C |
| 20 | human | 7551 | ZNF3 | zinc finger protein 3 | XM_024446919.1 | 90.8% | 90.6% | 1_108del;142_156del;320T>C |
| 21 | human | 7551 | ZNF3 | zinc finger protein 3 | XM_024446920.1 | 90.8% | 90.6% | 1_108del;142_156del;320T>C |
| 22 | human | 7551 | ZNF3 | zinc finger protein 3 | XM_024446921.1 | 90.8% | 90.6% | 1_108del;142_156del;320T>C |
| 23 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_001371218.1 | 89.4% | 89.2% | 0_1ins129;68T>C |
| 24 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_001318136.2 | 89.3% | 86.5% | (many diffs) |
| 25 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_001362775.2 | 89.3% | 86.5% | (many diffs) |
| 26 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_001371217.1 | 89.3% | 86.5% | (many diffs) |
| 27 | human | 7551 | ZNF3 | zinc finger protein 3 | XM_024446924.1 | 89.3% | 86.5% | (many diffs) |
| 28 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_001318137.2 | 19.6% | 13% | (many diffs) |
| 29 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_001371210.1 | 18% | 12% | (many diffs) |
| 30 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_017715.4 | 18% | 12% | (many diffs) |
| 31 | mouse | 56314 | Zfp113 | zinc finger protein 113 | NM_019747.4 | 77.5% | 76.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1296
- ORF length:
- 1230
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTT GGCGGCTGCG CTCCTAAAGG CCAAGTCCCA GGAGCTGGTA ACCTTTGAGG 121 ATGTAGCTGT GTACTTCATC CGGAAGGAGT GGAAGCGTTT GGAACCTGCT CAGAGGGACC 181 TCTATAGAGA TGTGATGCTG GAGAATTACG GGAATGTGTT CTCACTGGAT CGTGAGACCA 241 GGACTGAAAA TGATCAAGAA ACTTCTGAAG ACACAAGATC ACATGGGGTC CTACTGGGAA 301 GATTTCAAAA GGATATTTCT CAGGGTCTCA AGTTTAAAGA AGCCTATGAA CGAGAAGTCA 361 GTCTGAAAAG GCCGCTGGGG AACTCCCCTG GAGAAAGACT GAACAGGAAA ATGCCAGATT 421 TTGGTCAAGT GACAGTTGAG GAGAAGCTAA CCCCCAGGGG AGAGAGAAGC GAGAAATATA 481 ATGATTTTGG GAACAGCTTC ACTGTGAATT CCAACCTTAT CTCACATCAG AGACTCCCCG 541 TGGGAGACAG ACCCCATAAG TGTGATGAAT GTAGCAAGAG CTTTAATCGA ACTTCAGACC 601 TTATTCAACA TCAGAGAATC CACACTGGGG AAAAGCCCTA TGAATGTAAT GAGTGTGGGA 661 AGGCCTTCAG CCAGAGCTCA CACCTTATTC AGCATCAGAG AATCCACACT GGGGAAAAAC 721 CTTATGAATG TAGTGATTGT GGGAAAACCT TCAGCTGTAG CTCTGCCCTC ATTCTGCATC 781 GGAGGATCCA CACGGGGGAG AAACCCTATG AATGTAATGA GTGTGGGAAG ACCTTCAGCT 841 GGAGCTCCAC CCTCACCCAC CATCAGAGAA TCCACACTGG TGAGAAACCC TACGCCTGCA 901 ATGAATGTGG GAAGGCCTTC AGCAGGAGCT CAACCCTTAT TCACCATCAG AGAATCCACA 961 CTGGAGAAAA ACCCTATGAA TGTAATGAAT GTGGGAAAGC CTTCAGCCAG AGCTCACACC 1021 TCTATCAGCA CCAGAGAATC CACACTGGAG AGAAGCCCTA CGAATGTATG GAATGTGGAG 1081 GAAAGTTTAC CTACAGTTCA GGCCTTATTC AGCATCAAAG AATCCACACC GGGGAGAACC 1141 CCTATGAATG TAGTGAGTGT GGGAAAGCCT TCAGGTACAG CTCGGCTCTT GTTCGCCATC 1201 AGAGAATTCA CACTGGAGAG AAGCCTTTGA ATGGGATCGG CATGAGCAAA AGCTCCCTCA 1261 GAGTTACGAC CGAGTTAAAT ATCAGAGAGT CCACGTGCCC AACTTTCTTG TACAAAGTtg 1321 gcattataag aaagcattgc ttatcaattt gttgcaacga ac