Construct: ORF ccsbBroadEn_11237
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004942.1_s300c1, BRDN0000394849
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF180 (7733)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7733 | ZNF180 | zinc finger protein 180 | NM_001288759.3 | 99.8% | 99.5% | (many diffs) |
| 2 | human | 7733 | ZNF180 | zinc finger protein 180 | NM_013256.6 | 99.1% | 97.9% | (many diffs) |
| 3 | human | 7733 | ZNF180 | zinc finger protein 180 | NM_001278509.3 | 96% | 95.8% | (many diffs) |
| 4 | human | 7733 | ZNF180 | zinc finger protein 180 | NM_001291633.2 | 96% | 95.8% | (many diffs) |
| 5 | human | 7733 | ZNF180 | zinc finger protein 180 | NM_001278508.3 | 95.5% | 94.3% | (many diffs) |
| 6 | human | 7733 | ZNF180 | zinc finger protein 180 | NM_001288760.3 | 50.4% | 50.5% | 0_1ins1026;294G>A |
| 7 | human | 7733 | ZNF180 | zinc finger protein 180 | NM_001288761.3 | 50.4% | 50.5% | 0_1ins1026;294G>A |
| 8 | human | 7733 | ZNF180 | zinc finger protein 180 | NM_001288762.3 | 50.4% | 50.5% | 0_1ins1026;294G>A |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2142
- ORF length:
- 2073
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCGCAGGGTC TACGCGGGAA GCTGGAAGCG GTGTGCAGCT CAGGACCTCA 121 GCACCCTGCT GTGCCTGGAG GAGAGCATGG AAGAGCAGGA TGAGAAGCCC CCAGAGCCCC 181 CGAAGGCCTG TGCACAGGAT TCTTTCCTTC CTCAAGAGAT TATCATCAAA GTCGAGGGAG 241 AAGACACTGG GTCTCTGACC ATCCCATCTC AGGAAGGAGT GAACTTCAAA ATTGTGACTG 301 TGGACTTCAC ACGGGAGGAA CAGGGTACTT GGAACCCTGC TCAGAGGACC CTGGACAGAG 361 ATGTGATCCT GGAGAACCAC AGGGACCTAG TCTCTTGGGA CTTGGCAACT GCAGTTGGAA 421 AAAAAGATTC AACTTCAAAG CAGAGGATTT TTGATGAAGA ACCAGCTAAT GGAGTGAAGA 481 TAGAAAGGTT TACAAGGGAT GATCCTTGGT TATCTTCATG TGAAGAAGTG GATGATTGTA 541 AAGACCAGTT GGAGAAGCAA CAGGAAAAAC AAGAGATACT TTTGCAGGAA GTGGCATTCA 601 CTCAAAGGAA AGCAGTTATT CATGAGAGAG TCTGCAAAAG TGATGAAACT GGGGAGAAGA 661 GTGGTCTGAA TTCCAGTCTA TTTTCATCCC CAGTTATACC CATAAGAAAC CATTTTCATA 721 AACATGTATC ACATGCTAAA AAATGGCATC TTAATGCTGC TGTAAACAGT CATCAGAAGA 781 TTAATGAGAA TGAGACACTA TATGAAAATA ATGAATGTGG AAAACCCCCT CAGAGCATTC 841 ACCTTATTCA GTTTACAAGA ACTCAAACAA AAGATAAATG CTATGGATTT AGTGACCGTA 901 TTCAATCTTT TTGCCATGGT ACACCCCTAC ATATACATGA AAAAATTCAT GGAGGAGGAA 961 AAACCTTTGA TTTTAAAGAA TGTGGGCAGG TTTTGAACCC CAAAATATCC CATAATGAAC 1021 AACAGAGAAT TCCTTTTGAA GAGAGTCAAT ATAAATGTAG TGAAACCTCT CATAGTTCCT 1081 CCCTTACTCA AAACATGAGA AATAATTCTG AAGAGAAACC TTTTGAATGT AATCAGTGTG 1141 GGAAATCCTT CAGCTGGAGC TCGCATCTTG TTGCACATCA GAGAACTCAC ACAGGGGAGA 1201 AACCTTATGA ATGTAGTGAA TGTGGAAAAT CCTTCAGCCG GAGCTCGCAC CTTGTTTCCC 1261 ATCAGAGAAC TCATACTGGA GAGAAACCTT ACAGGTGTAA TCAATGTGGG AAATCCTTTA 1321 GCCAGAGTTA TGTCCTTGTT GTGCATCAAA GAACTCATAC TGGGGAGAAG CCTTATGAAT 1381 GCAATCAATG TGGAAAGTCA TTCAGGCAGA GCTATAAACT TATTGCACAT CAAAGAACAC 1441 ATACCGGAGA GAAGCCCTAT GAATGTAATC AATGTGGGAA ATCATTTATC CAGAGCTATA 1501 AACTTATTGC ACATCAAAGA ATTCATACTG GGGAAAAACC CTATGAATGC AATCAGTGTG 1561 GGAAATCCTT TAGTCAAAGT TATAAACTTG TTGCTCATCA GAGAACTCAC ACAGGAGAAA 1621 AACCCTTTGA ATGTAATCAG TGTGGGAAAT CCTTCAGCTG GAGCTCTCAG CTTGTTGCAC 1681 ATCAAAGAAC TCACACTGGA GAGAAACCGT ATGAATGTAG TGAATGTGGA AAATCTTTTA 1741 ACCGCAGTTC TCACCTTGTT ATGCATCAGA GAATTCACAC TGGGGAAAAA CCGTATGAAT 1801 GTAATCAGTG TGGGAAATCC TTCAGCCAGA GTTATGTTCT TGTTGTACAT CAGAGAACTC 1861 ATACTGGAGA AAAGCCCTAT GAATGCAGTC AATGTGGGAA GTCCTTCAGA CAGAGTTCAT 1921 GCCTTACTCA ACATCAGAGA ACTCATACTG GAGAGAAACC ATTTGAATGT AATCAGTGTG 1981 GAAAAACATT TAGCTTGAGT GCTCGACTTA TTGTGCATCA AAGAACTCAT ACTGGAGAGA 2041 AACCCTTTAC ATGTATTCAG TGTGGAAAAG CTTTCATTAA TAGCTATAAA CTTATTAGGC 2101 ATCAGGCAAC TCATACTGAA GAGAAACTCT ATGAATGTAA CTTGCCAACT TTCTTGTACA 2161 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac