Construct: ORF ccsbBroadEn_11246

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015540.1_s300c1, BRDN0000388242
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RAB7A (7879)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7879 RAB7A RAB7A, member RAS oncogene ... NM_004637.6 31% 12.4% 1_310del;621_622ins382
2 mouse 19349 Rab7 RAB7, member RAS oncogene f... NM_001293652.1 28.5% 12.4% (many diffs)
3 mouse 19349 Rab7 RAB7, member RAS oncogene f... NM_001293653.1 28.5% 12.4% (many diffs)
4 mouse 19349 Rab7 RAB7, member RAS oncogene f... NM_001293654.1 28.5% 12.4% (many diffs)
5 mouse 19349 Rab7 RAB7, member RAS oncogene f... NM_001293655.1 28.5% 12.4% (many diffs)
6 mouse 19349 Rab7 RAB7, member RAS oncogene f... NM_009005.3 28.5% 12.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
759
ORF length:
693
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAG TTTCTCATCC AGGCCAGTCC CCGAGATCCT GAAAACTTCC CATTTGTTGT
121GTTGGGAAAC AAGATTGACC TCGAAAACAG ACAAGTGGCC ACAAAGCGGG CACAGGCCTG
181GTGCTACAGC AAAAACAACA TTCCCTACTT TGAGACCAGT GCCAAGGAGG CCATCAACGT
241GGAGCAGGCG TTCCAGACGA TTGCACGGAA TGCACTTAAG CAGGAAACGG AGGTGGAGCT
301GTACAACGAA TTTCCTGAAC CTATCAAACT GGACAAGAAT GACCGGGCCA AGGCCTCGGC
361AGAAAGCTGC AGTTGCTGAG GGGGCAGTGA GAGTTGAGCA CAGAGTCCTT CACAAACCAA
421GAACACACGT AGGCCTTCAA CACAATTCCC CTCTCCTCTT CCAAACAAAA CATACATTGA
481TCTCTCACAT CCAGCTGCCA AAAGAAAACC CCATCAAACA CAGTTACACC CCACATATCT
541CTCACACACA CACACACACG CACACACACA CACACAGATC TGACGTAATC AAACTCCAGC
601CCTTGCCCGT GATGGCTCCT TGGGGTCTGC CTGCCCACCC ACATGAGCCC GCGAGTATGG
661CAGCAGGACA AGCCAGCGGT GGAAGTCATT CTGATATGGA GTTGGCATTG GAAGCTTATT
721CTTTTTGTTC ACTGGAGAGA GAGAGAACTG TTTACAGTTA CCCAACTTTC TTGTACAAAG
781Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)