Construct: ORF ccsbBroadEn_11314
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017653.1_s300c1, BRDN0000389151
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PER3 (8863)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8863 | PER3 | period circadian regulator 3 | NM_001289863.2 | 31.9% | 31.9% | 591_593delAGC;1138_3552del |
| 2 | human | 8863 | PER3 | period circadian regulator 3 | NM_001289861.1 | 31.7% | 31.7% | 591_593delAGC;1138_3573del |
| 3 | human | 8863 | PER3 | period circadian regulator 3 | NM_016831.3 | 31.4% | 31.4% | 1135_3603del |
| 4 | human | 8863 | PER3 | period circadian regulator 3 | XM_024450590.1 | 31.4% | 31.4% | 1135_3603del |
| 5 | human | 8863 | PER3 | period circadian regulator 3 | XM_017002726.2 | 31.4% | 31.4% | 1135_3606del |
| 6 | human | 8863 | PER3 | period circadian regulator 3 | XM_024450588.1 | 31.4% | 31.4% | 591_593delAGC;1138_3606del |
| 7 | human | 8863 | PER3 | period circadian regulator 3 | XM_005263524.4 | 31.4% | 31.4% | 591_593delAGC;1138_3609del |
| 8 | human | 8863 | PER3 | period circadian regulator 3 | XM_024450587.1 | 31.4% | 31.4% | 591_593delAGC;1138_3609del |
| 9 | human | 8863 | PER3 | period circadian regulator 3 | XM_017002724.2 | 31.2% | 31.2% | 1135_3624del |
| 10 | human | 8863 | PER3 | period circadian regulator 3 | XM_017002723.2 | 31.2% | 31.2% | 1135_3627del |
| 11 | human | 8863 | PER3 | period circadian regulator 3 | XM_024450586.1 | 31.2% | 31.2% | 591_593delAGC;1138_3627del |
| 12 | human | 8863 | PER3 | period circadian regulator 3 | NM_001289862.1 | 31.2% | 31.2% | 591_593delAGC;1138_3630del |
| 13 | human | 8863 | PER3 | period circadian regulator 3 | XM_024450585.1 | 31.2% | 31.2% | 591_593delAGC;1138_3630del |
| 14 | human | 8863 | PER3 | period circadian regulator 3 | XM_017002727.1 | 26.6% | 26.6% | 0_1ins168;423_425delAGC;970_3462del |
| 15 | human | 8863 | PER3 | period circadian regulator 3 | XM_017002732.1 | 21.9% | 20.9% | (many diffs) |
| 16 | human | 8863 | PER3 | period circadian regulator 3 | XM_017002731.2 | 21.7% | 20.7% | (many diffs) |
| 17 | human | 8863 | PER3 | period circadian regulator 3 | XM_017002730.2 | 21.6% | 20.6% | (many diffs) |
| 18 | human | 8863 | PER3 | period circadian regulator 3 | XM_017002728.1 | 21.6% | 20.6% | (many diffs) |
| 19 | human | 8863 | PER3 | period circadian regulator 3 | XM_017002729.1 | 21.3% | 20.5% | 0_1ins244;30_31ins116;775_3267del |
| 20 | human | 8863 | PER3 | period circadian regulator 3 | XM_024450612.1 | 16.8% | 16.8% | 0_1ins525;66_68delAGC;613_3081del |
| 21 | human | 8863 | PER3 | period circadian regulator 3 | XM_024450611.1 | 16.8% | 16.8% | 0_1ins525;66_68delAGC;613_3084del |
| 22 | human | 8863 | PER3 | period circadian regulator 3 | XM_017002735.2 | 16.7% | 16.7% | 0_1ins525;66_68delAGC;613_3102del |
| 23 | human | 8863 | PER3 | period circadian regulator 3 | XM_017002733.2 | 16.7% | 16.7% | 0_1ins525;66_68delAGC;613_3105del |
| 24 | human | 8863 | PER3 | period circadian regulator 3 | XM_017002734.1 | 16.7% | 16.7% | 0_1ins525;66_68delAGC;613_3105del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1200
- ORF length:
- 1134
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC CCGCGGGGAA GCTCCTGGCC CCGGGAGACG GGGGGCTAAG GACGAGGCCC 121 TGGGCGAAGA ATCGGGGGAG CGGTGGAGCC CCGAGTTCCA TCTGCAGAGG AAATTGGCGG 181 ACAGCAGCCA CAGTGAACAG CAAGATCGAA ACAGAGTTTC TGAAGAACTT ATCATGGTTG 241 TCCAAGAAAT GAAAAAATAC TTCCCCTCGG AGAGACGCAA TAAACCAAGC ACTCTAGATG 301 CCCTCAACTA TGCTCTCCGC TGTGTCCACA GCGTTCAAGC AAACAGTGAG TTTTTCCAGA 361 TTCTCAGTCA GAATGGAGCA CCTCAGGCAG ATGTGAGCAT GTACAGTCTT GAGGAGCTGG 421 CCACTATCGC TTCAGAACAC ACTTCCAAAA ACACAGATAC CTTTGTGGCA GTATTTTCAT 481 TTCTGTCTGG AAGGTTAGTG CACATTTCTG AACAGGCTGC TTTGATCCTG AATCGTAAGA 541 AAGATGTCCT GGCGTCTTCT CACTTTGTTG ACCTGCTTGC ACCTCAAGAC ATGAGGGTAT 601 TCTACGCGCA CACTGCCAGA GCTCAGCTTC CTTTCTGGAA CAACTGGACC CAAAGAGCTG 661 CACGGTATGA ATGTGCTCCG GTGAAACCTT TTTTCTGCAG GATCCGTGGA GGTGAAGACA 721 GAAAGCAAGA GAAGTGTCAC TCCCCATTCC GGATCATCCC CTATCTGATT CATGTACATC 781 ACCCTGCCCA GCCAGAATTG GAATCGGAAC CTTGCTGTCT CACTGTGGTT GAAAAGATTC 841 ACTCTGGTTA TGAAGCTCCT CGGATCCCAG TGAATAAAAG AATCTTCACC ACCACACACA 901 CCCCAGGGTG TGTTTTTCTT GAAGTAGATG AAAAAGCAGT GCCTTTGCTG GGTTACCTAC 961 CTCAGGACCT GATTGGAACA TCGATCCTAA GCTACCTGCA CCCTGAAGAT CGTTCTCTGA 1021 TGGTTGCCAT ACACCAAAAA GTTTTGAAGT ATGCAGGGCA TCCTCCCTTT GAACATTCTC 1081 CCATTCGATT TTGTACTCAA AACGGAGACT ACATCATACT GGATTCCAGT TGGTCCAGCT 1141 TTGTGAATCC CTGGAGCCGG AAGATTTCTT TCATCATTGG TCGGCATAAA GTTCGAACGT 1201 ACCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 1261 acgaac