Construct: ORF ccsbBroadEn_11357

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016371.1_s300c1, BRDN0000389747
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TRIP11 (9321)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9321 TRIP11 thyroid hormone receptor in... XR_001750598.2 4.1% (many diffs)
2 human 9321 TRIP11 thyroid hormone receptor in... NM_004239.4 3.8% 3.6% (many diffs)
3 human 9321 TRIP11 thyroid hormone receptor in... NM_001321851.1 3.8% 3.6% (many diffs)
4 human 9321 TRIP11 thyroid hormone receptor in... XR_943560.2 3.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
306
ORF length:
240
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC GTCCTGGCTT GGGGGCCTCG GCTCCGGATT GGGCCAGTCT CTGGGTCAAG
121TCGGGGGCAG CCTGGCTTCC CTCACTGGCC AGATATCAAA CTTTACAAAG GATATGCTGA
181TGGAGGGCAC GGAGGAAGTG GAAGCAGAAT TACCTGATTC TAGGACAAAG GAAATTGAAG
241CCATTCATGC AATCTTGAGA TCAGAGTTGC CTTTGTGTAC ACACCTGCTT TCAGCCTTCT
301ACATATGCCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt
361gttgcaacga ac

Download FASTA (ORF) (Full)