Construct: ORF ccsbBroadEn_11367
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007737.1_s300c1, BRDN0000398446
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CDYL (9425)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9425 | CDYL | chromodomain Y like | NM_001368127.1 | 99.7% | 99.3% | 884T>C;904T>A |
| 2 | human | 9425 | CDYL | chromodomain Y like | NM_001143970.1 | 74.8% | 74.5% | 1_309del;1193T>C;1213T>A |
| 3 | human | 9425 | CDYL | chromodomain Y like | NM_001143971.2 | 74.8% | 74.5% | 1_309del;1193T>C;1213T>A |
| 4 | human | 9425 | CDYL | chromodomain Y like | NM_001368126.1 | 58% | 56.1% | (many diffs) |
| 5 | human | 9425 | CDYL | chromodomain Y like | NM_004824.4 | 56.6% | 56.4% | 1_705del;1589T>C;1609T>A |
| 6 | human | 9425 | CDYL | chromodomain Y like | NM_001368125.1 | 51.5% | 51.3% | 1_867del;1751T>C;1771T>A |
| 7 | mouse | 12593 | Cdyl | chromodomain protein, Y chr... | NM_001123386.1 | 51.1% | 55.1% | (many diffs) |
| 8 | mouse | 12593 | Cdyl | chromodomain protein, Y chr... | XM_006516536.2 | 48.8% | 52.7% | (many diffs) |
| 9 | mouse | 12593 | Cdyl | chromodomain protein, Y chr... | NM_009881.3 | 46.8% | 50.5% | (many diffs) |
| 10 | mouse | 12593 | Cdyl | chromodomain protein, Y chr... | XR_382045.3 | 18.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 996
- ORF length:
- 927
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGATGCATTA ACAGCCAATG GGACAACCAA CATACAGACA TCTGTTACAG 121 GAGTGACTGC CAGCAAAAGG AAATTTATTG ACGACAGAAG AGACCAGCCT TTTGACAAGC 181 GATTGCGTTT CAGCGTGAGG CAAACAGAAA GTGCCTACAG ATACAGAGAT ATTGTGGTCA 241 GGAAGCAGGA TGGCTTCACC CACATCTTGT TATCCACAAA GTCCTCAGAG AATAACTCAC 301 TAAATCCAGA GGTAATGAGA GAAGTCCAGA GTGCTCTGAG CACGGCCGCT GCCGATGACA 361 GCAAGCTGGT ACTGCTCAGC GCCGTTGGCA GCGTCTTCTG TTGTGGACTT GACTTTATTT 421 ATTTTATACG ACGTCTGACA GATGACAGGA AAAGAGAAAG CACTAAAATG GCAGAAGCTA 481 TCAGAAACTT CGTGAATACT TTCATTCAAT TTAAGAAGCC CATTATTGTA GCAGTCAATG 541 GCCCAGCCAT TGGTCTAGGA GCATCTATAT TGCCTCTTTG CGATGTGGTT TGGGCTAATG 601 AAAAGGCTTG GTTTCAAACA CCCTATACCA CCTTCGGACA GAGTCCAGAT GGCTGTTCTA 661 CCGTTATGTT TCCCAAGATA ATGGGAGGAG CATCTGCAAA CGAGATGCTG CTCAGTGGAC 721 GGAAGCTGAC AGCGCAGGAG GCGTGTGGCA AGGGCCTGGT CTCCCAGGTG TTTTGGCCCG 781 GGACGTTCAC TCAGGAAGTG ATGGTTCGCA TTAAGGAGCT TGCCTCGTGC AATCCAGTTG 841 TGCTTGAGGA ATCCAAAGCC CTCGTGCGCT GCAACATGAA GATGGAGCTG GAGCAGGCCA 901 ACGAGAGGGA GTGTGAGGTG CTGAAGAAAA TCTGGGGCTC GGCCCAGGGG ACGGACTCCA 961 TGTTAAAGTA CATGCAGAGG AAGATCGATG AGTTCTTGCC AACTTTCTTG TACAAAGTtg 1021 gcattataag aaagcattgc ttatcaattt gttgcaacga ac