Construct: ORF ccsbBroadEn_11430
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015559.1_s300c1, BRDN0000397009
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- AP5Z1 (9907)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9907 | AP5Z1 | adaptor related protein com... | NM_001364858.1 | 68.4% | 68.3% | 1338_1953delinsG |
| 2 | human | 9907 | AP5Z1 | adaptor related protein com... | NM_014855.3 | 55.2% | 55.1% | 1_468del;1806_2421delinsG |
| 3 | human | 9907 | AP5Z1 | adaptor related protein com... | NR_157345.1 | 24% | 1_561del;1403_1440del;1937_5567delinsG |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1404
- ORF length:
- 1338
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC CAAGGTCGTG GTCCTCAGCC CGGGCACCCT CCAGGAGGAC CAGGCCACCC 121 TGCTCAGCAA GCGGCTGGTC GACTGGCTGC GCTACGCCAG CCTCCAGCAA GGGCTCCCAC 181 ACTCCGGCGG CTTCTTCTCC ACGCCCAGGG CCCGGCAGCC GGGCCCCGTC ACCGAGGTGG 241 ACGGGGCGGT AGCCACAGAC TTCTTCACGG TGCTCTCCAG CGGCCACCGC TTCACAGACG 301 ACCAGTGGCT GAACGTGCAG GCCTTCTCTA TGCTGCGGGC GTGGCTGCTG CACAGCGGCC 361 CCGAGGGCCC GGGCACCCTG GACACAGATG ACAGGTCAGA GCAGGAGGGC TCCACTCTGT 421 CGGTGATCTC CGCCACCTCC TCTGCCGGCC GCCTGCTGCC GCCCCGGGAG CGGCTTCGGG 481 AGGTGGCCTT CGAGTACTGC CAGCGCCTCA TTGAGCAAAG TAACCGACGA GCCCTGAGGA 541 AGGGGGACTC CGACCTGCAG AAAGCTTGCC TGGTGGAGGC CGTGCTGGTG CTGGACGTGC 601 TGTGCCGGCA GGACCCGTCC TTCCTGTACC GAAGTCTCTC CTGCCTGAAG GCCCTGCACG 661 GGCGGGTGCG CGGGGACCCG GCCTCTGTGC GGGTGCTGCT GCCCCTCGCC CACTTCTTCC 721 TGAGCCACGG GGAAGCGGCT GCAGTGGACT CGGAAGCCGT CTACCAGCAC CTGTTCACCA 781 GGATCCCGGT GGAGCAGTTC CACAGCCCCA TGCTGGCCTT TGAATTCATC CAGTTCTGCA 841 GGGACAACCT CCACCTGTTC AGCGGGCACC TCAGCACCCT CAGATTGAGC TTCCCCAACC 901 TCTTTAAGTT CCTGGCCTGG AACAGCCCAC CCCTCACCTC CGAGTTTGTG GCGCTCCTCC 961 CGGCCCTGGT GGACGCTGGC ACAGCCCTGG AGATGCTGCA CGCGCTGCTG GACCTGCCCT 1021 GCTTGACGGC GGTGCTGGAC CTGCAGCTCA GGTCAGCACC GGCTGCATCC GAGAGGCCAC 1081 TCTGGGACAC CTCTCTCAGG GCCCCCAGCT GCCTGGAGGC CTTCCGGGAC CCGCAGTTCC 1141 AGGGTCTTTT CCAATACCTG CTGCGCCCCA AGGCCAGTGG CGCCACTGAG AGGTTGGCGC 1201 CACTCCACCA GCTGCTGCAG CCCATGGCCG GCTGTGCCCG CGTGGCCCAG TGTGCCCAGG 1261 CCGTGCCCAC GCTGCTGCAG GCATTCTTCT CAGCAGTGAC CCAGGTGGCT GACGGGTCCC 1321 TGATCAACCA GCTGGCGCTG CTGCTCCTGG GCAGGAGCGA CTCGCTCTAC CCGGCCCCAG 1381 GGTACGCTGC CGGTGTGCAC AGGTACCCAA CTTTCTTGTA CAAAGTtggc attataagaa 1441 agcattgctt atcaatttgt tgcaacgaac