Construct: ORF ccsbBroadEn_11458

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010629.1_s300c1, BRDN0000397872
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FAM13A (10144)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10144 FAM13A family with sequence simila... XM_024453870.1 34.5% 34.4% 606_1752delinsG
2 human 10144 FAM13A family with sequence simila... XM_017007624.2 20.5% 20.4% 606_2943delinsG
3 human 10144 FAM13A family with sequence simila... XM_005262683.3 20.2% 20.2% 606_2985delinsG
4 human 10144 FAM13A family with sequence simila... XM_011531517.2 20.2% 20.2% 606_2985delinsG
5 human 10144 FAM13A family with sequence simila... XM_005262681.3 19.9% 19.9% 606_3027delinsG
6 human 10144 FAM13A family with sequence simila... NM_014883.4 19.7% 19.6% 606_3069delinsG
7 human 10144 FAM13A family with sequence simila... XM_011531516.1 19.7% 19.6% 606_3069delinsG
8 human 10144 FAM13A family with sequence simila... XM_005262682.2 17.7% 17.6% 0_1ins60;546_3009delinsG
9 human 10144 FAM13A family with sequence simila... XM_017007625.1 13.8% 12.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
672
ORF length:
606
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGG GGCAGGAGCT CTAGCCATCT GTCAAAGTAA AGCAGCGGTT CGGCTGAAAG
121AAGACATGAA AAAGATAGTG GCAGTGCCAT TAAATGAACA GAAGGATTTT ACCTATCAGA
181AGTTATTTGG AGTCAGTCTC CAAGAACTTG AACGGCAGGG GCTCACCGAG AATGGCATTC
241CAGCAGTAGT GTGGAATATA GTGGAATATT TGACGCAGCA TGGACTTACC CAAGAAGGTC
301TTTTTAGGGT GAATGGTAAC GTGAAGGTGG TGGAACAACT TCGACTGAAG TTCGAGAGTG
361GAGTGCCCGT GGAGCTCGGG AAGGACGGTG ATGTCTGCTC AGCAGCCAGT CTGTTGAAGC
421TGTTTCTGAG GGAGCTGCCT GACAGTCTGA TCACCTCAGC GTTGCAGCCT CGATTCATTC
481AACTCTTTCA GGATGGCAGA AATGATGTTC AGGAGAGTAG CTTAAGAGAC TTAATAAAAG
541AGCTGCCAGA CACCCACTAC TGCCTCCTCA AGTACCTTTG CCAGTTCTTG ACAAAAGTAG
601CCAAGCATCA TGTGCAGAAT CGCATGAATG TTCACAATCT CGCCACTGTA TTTGGGCCAA
661ATTGCTTTCA GTACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat
721caatttgttg caacgaac

Download FASTA (ORF) (Full)