Construct: ORF ccsbBroadEn_11458
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010629.1_s300c1, BRDN0000397872
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FAM13A (10144)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10144 | FAM13A | family with sequence simila... | XM_024453870.1 | 34.5% | 34.4% | 606_1752delinsG |
| 2 | human | 10144 | FAM13A | family with sequence simila... | XM_017007624.2 | 20.5% | 20.4% | 606_2943delinsG |
| 3 | human | 10144 | FAM13A | family with sequence simila... | XM_005262683.3 | 20.2% | 20.2% | 606_2985delinsG |
| 4 | human | 10144 | FAM13A | family with sequence simila... | XM_011531517.2 | 20.2% | 20.2% | 606_2985delinsG |
| 5 | human | 10144 | FAM13A | family with sequence simila... | XM_005262681.3 | 19.9% | 19.9% | 606_3027delinsG |
| 6 | human | 10144 | FAM13A | family with sequence simila... | NM_014883.4 | 19.7% | 19.6% | 606_3069delinsG |
| 7 | human | 10144 | FAM13A | family with sequence simila... | XM_011531516.1 | 19.7% | 19.6% | 606_3069delinsG |
| 8 | human | 10144 | FAM13A | family with sequence simila... | XM_005262682.2 | 17.7% | 17.6% | 0_1ins60;546_3009delinsG |
| 9 | human | 10144 | FAM13A | family with sequence simila... | XM_017007625.1 | 13.8% | 12.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 672
- ORF length:
- 606
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG GGCAGGAGCT CTAGCCATCT GTCAAAGTAA AGCAGCGGTT CGGCTGAAAG 121 AAGACATGAA AAAGATAGTG GCAGTGCCAT TAAATGAACA GAAGGATTTT ACCTATCAGA 181 AGTTATTTGG AGTCAGTCTC CAAGAACTTG AACGGCAGGG GCTCACCGAG AATGGCATTC 241 CAGCAGTAGT GTGGAATATA GTGGAATATT TGACGCAGCA TGGACTTACC CAAGAAGGTC 301 TTTTTAGGGT GAATGGTAAC GTGAAGGTGG TGGAACAACT TCGACTGAAG TTCGAGAGTG 361 GAGTGCCCGT GGAGCTCGGG AAGGACGGTG ATGTCTGCTC AGCAGCCAGT CTGTTGAAGC 421 TGTTTCTGAG GGAGCTGCCT GACAGTCTGA TCACCTCAGC GTTGCAGCCT CGATTCATTC 481 AACTCTTTCA GGATGGCAGA AATGATGTTC AGGAGAGTAG CTTAAGAGAC TTAATAAAAG 541 AGCTGCCAGA CACCCACTAC TGCCTCCTCA AGTACCTTTG CCAGTTCTTG ACAAAAGTAG 601 CCAAGCATCA TGTGCAGAAT CGCATGAATG TTCACAATCT CGCCACTGTA TTTGGGCCAA 661 ATTGCTTTCA GTACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 721 caatttgttg caacgaac