Construct: ORF ccsbBroadEn_11484
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016033.1_s300c1, BRDN0000398401
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CLEC4M (10332)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10332 | CLEC4M | C-type lectin domain family... | XM_006722611.2 | 94.4% | 92.2% | (many diffs) |
| 2 | human | 10332 | CLEC4M | C-type lectin domain family... | NM_014257.5 | 94.3% | 92.2% | (many diffs) |
| 3 | human | 10332 | CLEC4M | C-type lectin domain family... | XM_006722613.3 | 92.4% | 92% | (many diffs) |
| 4 | human | 10332 | CLEC4M | C-type lectin domain family... | XM_006722612.3 | 90.6% | 87.8% | (many diffs) |
| 5 | human | 30835 | CD209 | CD209 molecule | NM_021155.4 | 89.4% | 86.6% | (many diffs) |
| 6 | human | 10332 | CLEC4M | C-type lectin domain family... | NM_001144905.2 | 89% | 86.6% | (many diffs) |
| 7 | human | 10332 | CLEC4M | C-type lectin domain family... | NM_001144910.2 | 88.9% | 86.7% | (many diffs) |
| 8 | human | 30835 | CD209 | CD209 molecule | NM_001144897.2 | 87.9% | 85.1% | (many diffs) |
| 9 | human | 10332 | CLEC4M | C-type lectin domain family... | XM_006722614.3 | 87.5% | 87.5% | (many diffs) |
| 10 | human | 10332 | CLEC4M | C-type lectin domain family... | NM_001144904.2 | 86.8% | 86.4% | (many diffs) |
| 11 | human | 30835 | CD209 | CD209 molecule | NM_001144896.2 | 83.4% | 80.6% | (many diffs) |
| 12 | human | 10332 | CLEC4M | C-type lectin domain family... | NM_001144909.2 | 83.1% | 80.7% | (many diffs) |
| 13 | human | 10332 | CLEC4M | C-type lectin domain family... | XR_936147.2 | 81.1% | (many diffs) | |
| 14 | human | 10332 | CLEC4M | C-type lectin domain family... | NM_001144907.2 | 80.4% | 76.9% | (many diffs) |
| 15 | human | 30835 | CD209 | CD209 molecule | NM_001144894.2 | 78.5% | 75.7% | (many diffs) |
| 16 | human | 10332 | CLEC4M | C-type lectin domain family... | XM_006722615.2 | 75.5% | 70.9% | (many diffs) |
| 17 | human | 10332 | CLEC4M | C-type lectin domain family... | NM_001144911.2 | 73.2% | 70.3% | (many diffs) |
| 18 | human | 10332 | CLEC4M | C-type lectin domain family... | XR_430125.2 | 70.3% | (many diffs) | |
| 19 | human | 30835 | CD209 | CD209 molecule | NM_001144895.2 | 69.4% | 66.5% | (many diffs) |
| 20 | human | 10332 | CLEC4M | C-type lectin domain family... | NM_001144906.2 | 63.1% | 59.4% | (many diffs) |
| 21 | human | 30835 | CD209 | CD209 molecule | NM_001144893.2 | 58.5% | 55.6% | (many diffs) |
| 22 | human | 30835 | CD209 | CD209 molecule | XM_005272472.4 | 58% | 55.1% | (many diffs) |
| 23 | human | 10332 | CLEC4M | C-type lectin domain family... | NM_001144908.2 | 53% | 47.8% | (many diffs) |
| 24 | human | 30835 | CD209 | CD209 molecule | NM_001144899.2 | 52.3% | 49.5% | (many diffs) |
| 25 | human | 10332 | CLEC4M | C-type lectin domain family... | NR_026707.2 | 49.3% | (many diffs) | |
| 26 | human | 10332 | CLEC4M | C-type lectin domain family... | NR_026708.2 | 44.4% | (many diffs) | |
| 27 | human | 10332 | CLEC4M | C-type lectin domain family... | NR_026709.2 | 42.6% | (many diffs) | |
| 28 | human | 10332 | CLEC4M | C-type lectin domain family... | XR_001753584.1 | 40.4% | (many diffs) | |
| 29 | human | 10332 | CLEC4M | C-type lectin domain family... | XR_001753583.1 | 38.8% | (many diffs) | |
| 30 | human | 30835 | CD209 | CD209 molecule | NR_026692.2 | 24.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1230
- ORF length:
- 1161
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAGTGACTCC AAGGAACCAA GACTGCAGCA GCTGGGCCTC CTGGAGGAGG 121 AACAGCTGAG AGGCCTTGGA TTCCGACAGA CTCGAGGATA CAAGAGCTTA GCAGGGTGTC 181 TTGGCCATGG TCCCCTGGTG CTGCAACTCC TCTCCTTCAC GCTCTTGGCT GGGCTCCTTG 241 TCCAAGTGTC CAAGGTCCCC AGCTCCATAA GTCAGGAACA ATCCAGGCAA GACGCGATCT 301 ACCAGAACCT GACCCAGCTT AAAGCTGCAG TGGGTGAGCT CTCAGAGAAA TCCAAGCTGC 361 AGGAGATCTA CCAGGAGCTG ACCCAGCTGA AGGCTGCAGT GGGTGAGCTT CCAGAGAAAT 421 CTAAGCTGCA GGAGATCTAC CAGGAGCTGA CCCGGCTGAA GGCTGCAGTG GGTGAGCTTC 481 CAGAGAAATC TAAGCTGCAG GAGATCTACC AGGAGCTGAC CTGGCTGAAG GCTGCAGTGG 541 GTGAGTTGCC AGAGAAATCC AAGCTGCAGG AGATCTACCA GGAGCTGACC CGGCTGAAGG 601 CTGCAGTGGG TGAGTTGCCA GAGAAATCCA AGCTGCAGGA GATCTACCAG GAGCTGACGG 661 AGCTGAAGGC TGCAGTGGGT GAGTTGCCAG AGAAATCCAA GCTGCAGGAG ATCTACCAGG 721 AGCTGACCCA GCTGAAGGCT GCAGTGGGTG AGTTGCCAGA CCAGTCCAAG CAGCAGCAAA 781 TCTATCAAGA ACTGACCGAT TTGAAGACTG CATTTGAACG CCTGTGCCGC CACTGTCCCA 841 AGGACTGGAC ATTCTTCCAA GGAAACTGTT ACTTCATGTC TAACTCCCAG CGGAACTGGC 901 ACGACTCCGT CACCGCCTGC CAGGAAGTGA GGGCCCAGCT CGTCGTAATC AAAACTGCTG 961 AGGAGCAGAA CTTCCTACAG CTGCAGACTT CCAGGAGTAA CCGCTTCTCC TGGATGGGAC 1021 TTTCAGACCT AAATCAGGAA GGCACGTGGC AATGGGTGGA CGGCTCACCT CTGTCACCCA 1081 GCTTCCAGCG GTACTGGAAC AGTGGAGAAC CCAACAATAG CGGGAATGAA GACTGTGCGG 1141 AATTTAGTGG CAGTGGCTGG AACGACAATC GATGTGACGT TGACAATTAC TGGATCTGCA 1201 AAAAGCCCGC AGCCTGCTTC AGAGACGAAT TGCCAACTTT CTTGTACAAA GTtggcatta 1261 taagaaagca ttgcttatca atttgttgca acgaac