Construct: ORF ccsbBroadEn_11484

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016033.1_s300c1, BRDN0000398401
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CLEC4M (10332)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10332 CLEC4M C-type lectin domain family... XM_006722611.2 94.4% 92.2% (many diffs)
2 human 10332 CLEC4M C-type lectin domain family... NM_014257.5 94.3% 92.2% (many diffs)
3 human 10332 CLEC4M C-type lectin domain family... XM_006722613.3 92.4% 92% (many diffs)
4 human 10332 CLEC4M C-type lectin domain family... XM_006722612.3 90.6% 87.8% (many diffs)
5 human 30835 CD209 CD209 molecule NM_021155.4 89.4% 86.6% (many diffs)
6 human 10332 CLEC4M C-type lectin domain family... NM_001144905.2 89% 86.6% (many diffs)
7 human 10332 CLEC4M C-type lectin domain family... NM_001144910.2 88.9% 86.7% (many diffs)
8 human 30835 CD209 CD209 molecule NM_001144897.2 87.9% 85.1% (many diffs)
9 human 10332 CLEC4M C-type lectin domain family... XM_006722614.3 87.5% 87.5% (many diffs)
10 human 10332 CLEC4M C-type lectin domain family... NM_001144904.2 86.8% 86.4% (many diffs)
11 human 30835 CD209 CD209 molecule NM_001144896.2 83.4% 80.6% (many diffs)
12 human 10332 CLEC4M C-type lectin domain family... NM_001144909.2 83.1% 80.7% (many diffs)
13 human 10332 CLEC4M C-type lectin domain family... XR_936147.2 81.1% (many diffs)
14 human 10332 CLEC4M C-type lectin domain family... NM_001144907.2 80.4% 76.9% (many diffs)
15 human 30835 CD209 CD209 molecule NM_001144894.2 78.5% 75.7% (many diffs)
16 human 10332 CLEC4M C-type lectin domain family... XM_006722615.2 75.5% 70.9% (many diffs)
17 human 10332 CLEC4M C-type lectin domain family... NM_001144911.2 73.2% 70.3% (many diffs)
18 human 10332 CLEC4M C-type lectin domain family... XR_430125.2 70.3% (many diffs)
19 human 30835 CD209 CD209 molecule NM_001144895.2 69.4% 66.5% (many diffs)
20 human 10332 CLEC4M C-type lectin domain family... NM_001144906.2 63.1% 59.4% (many diffs)
21 human 30835 CD209 CD209 molecule NM_001144893.2 58.5% 55.6% (many diffs)
22 human 30835 CD209 CD209 molecule XM_005272472.4 58% 55.1% (many diffs)
23 human 10332 CLEC4M C-type lectin domain family... NM_001144908.2 53% 47.8% (many diffs)
24 human 30835 CD209 CD209 molecule NM_001144899.2 52.3% 49.5% (many diffs)
25 human 10332 CLEC4M C-type lectin domain family... NR_026707.2 49.3% (many diffs)
26 human 10332 CLEC4M C-type lectin domain family... NR_026708.2 44.4% (many diffs)
27 human 10332 CLEC4M C-type lectin domain family... NR_026709.2 42.6% (many diffs)
28 human 10332 CLEC4M C-type lectin domain family... XR_001753584.1 40.4% (many diffs)
29 human 10332 CLEC4M C-type lectin domain family... XR_001753583.1 38.8% (many diffs)
30 human 30835 CD209 CD209 molecule NR_026692.2 24.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1230
ORF length:
1161
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GAGTGACTCC AAGGAACCAA GACTGCAGCA GCTGGGCCTC CTGGAGGAGG
121AACAGCTGAG AGGCCTTGGA TTCCGACAGA CTCGAGGATA CAAGAGCTTA GCAGGGTGTC
181TTGGCCATGG TCCCCTGGTG CTGCAACTCC TCTCCTTCAC GCTCTTGGCT GGGCTCCTTG
241TCCAAGTGTC CAAGGTCCCC AGCTCCATAA GTCAGGAACA ATCCAGGCAA GACGCGATCT
301ACCAGAACCT GACCCAGCTT AAAGCTGCAG TGGGTGAGCT CTCAGAGAAA TCCAAGCTGC
361AGGAGATCTA CCAGGAGCTG ACCCAGCTGA AGGCTGCAGT GGGTGAGCTT CCAGAGAAAT
421CTAAGCTGCA GGAGATCTAC CAGGAGCTGA CCCGGCTGAA GGCTGCAGTG GGTGAGCTTC
481CAGAGAAATC TAAGCTGCAG GAGATCTACC AGGAGCTGAC CTGGCTGAAG GCTGCAGTGG
541GTGAGTTGCC AGAGAAATCC AAGCTGCAGG AGATCTACCA GGAGCTGACC CGGCTGAAGG
601CTGCAGTGGG TGAGTTGCCA GAGAAATCCA AGCTGCAGGA GATCTACCAG GAGCTGACGG
661AGCTGAAGGC TGCAGTGGGT GAGTTGCCAG AGAAATCCAA GCTGCAGGAG ATCTACCAGG
721AGCTGACCCA GCTGAAGGCT GCAGTGGGTG AGTTGCCAGA CCAGTCCAAG CAGCAGCAAA
781TCTATCAAGA ACTGACCGAT TTGAAGACTG CATTTGAACG CCTGTGCCGC CACTGTCCCA
841AGGACTGGAC ATTCTTCCAA GGAAACTGTT ACTTCATGTC TAACTCCCAG CGGAACTGGC
901ACGACTCCGT CACCGCCTGC CAGGAAGTGA GGGCCCAGCT CGTCGTAATC AAAACTGCTG
961AGGAGCAGAA CTTCCTACAG CTGCAGACTT CCAGGAGTAA CCGCTTCTCC TGGATGGGAC
1021TTTCAGACCT AAATCAGGAA GGCACGTGGC AATGGGTGGA CGGCTCACCT CTGTCACCCA
1081GCTTCCAGCG GTACTGGAAC AGTGGAGAAC CCAACAATAG CGGGAATGAA GACTGTGCGG
1141AATTTAGTGG CAGTGGCTGG AACGACAATC GATGTGACGT TGACAATTAC TGGATCTGCA
1201AAAAGCCCGC AGCCTGCTTC AGAGACGAAT TGCCAACTTT CTTGTACAAA GTtggcatta
1261taagaaagca ttgcttatca atttgttgca acgaac

Download FASTA (ORF) (Full)

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