Construct: ORF ccsbBroadEn_11503
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013838.1_s300c1, BRDN0000394876
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MERTK (10461)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10461 | MERTK | MER proto-oncogene, tyrosin... | NM_006343.3 | 82.2% | 82.1% | (many diffs) |
| 2 | mouse | 17289 | Mertk | c-mer proto-oncogene tyrosi... | NM_008587.2 | 69.3% | 70.5% | (many diffs) |
| 3 | mouse | 17289 | Mertk | c-mer proto-oncogene tyrosi... | XM_006498860.3 | 68.5% | 69.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2538
- ORF length:
- 2469
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAAAATAAAC AATGAAGAGA TCGTGTCTGA TCCCATCTAC ATCGAAGTAC 121 AAGGACTTCC TCACTTTACT AAGCAGCCTG AGAGCATGAA TGTCACCAGA AACACAGCCT 181 TCAACCTCAC CTGTCAGGCT GTGGGCCCGC CTGAGCCCGT CAACATTTTC TGGGTTCAAA 241 ACAGTAGCCG TGTTAACGAA CAGCCTGAAA AATCCCCCTC CGTGCTAACT GTTCCAGGCC 301 TGACGGAGAT GGCGGTCTTC AGTTGTGAGG CCCACAATGA CAAAGGGCTG ACCGTGTCCA 361 AGGGAGTGCA GATCAACATC AAAGCAATTC CCTCCCCACC AACTGAAGTC AGCATCCGTA 421 ACAGCACTGC ACACAGCATT CTGATCTCCT GGGTTCCTGG TTTTGATGGA TACTCCCCGT 481 TCAGGAATTG CAGCATTCAG GTCAAGGAAG CTGATCCGCT GAGTAATGGC TCAGTCATGA 541 TTTTTAACAC CTCTGCCTTA CCACATCTGT ACCAAATCAA GCAGCTGCAA GCCCTGGCTA 601 ATTACAGCAT TGGTGTTTCC TGCATGAATG AAATAGGCTG GTCTGCAGTG AGCCCTTGGA 661 TTCTAGCCAG CACGACTGAA GGAGCCCCAT CAGTAGCACC TTTAAATGTC ACTGTGTTTC 721 TGAATGAATC TAGTGATAAT GTGGACATCA GATGGATGAA GCCTCCGACT AAGCAGCAGG 781 ATGGAGAACT GGTGGGCTAC CGGATATCCC ACGTGTGGCA GAGTGCAGGG ATTTCCAAAG 841 AGCTCTTGGA GGAAGTTGGC CAGAATGGCA GCCGAGCTCG GATCTCTGTT CAAGTCCACA 901 ATGCTACGTG CACAGTGAGG ATTGCAGCCG TCACCAAAGG GGGAGTTGGG CCCTTCAGTG 961 ATCCAGTGAA AATATTTATC CCTGCACACG GTTGGGTAGA TTATGCCCCC TCTTCAACTC 1021 CGGCGCCTGG CAACGCAGAT CCTGTGCTCA TCATCTTTGG CTGCTTTTGT GGATTTATTT 1081 TGATTGGGTT GGTTTTATAC ATCTCCTTGG CCATCAGAAA AAGAGTCCAG GAGACAAAGT 1141 TTGGGAATGC ATTCACAGAG GAGGATTCTG AATTAGTGGT GAATTATATA GCAAAGAAAT 1201 CCTTCTGTCG GCGAGCCATT GAACTTACCT TACATAGCTT GGGAGTCAGT GAGGAACTAC 1261 AAAATAAACT AGAAGATGTT GTGATTGACA GGAATCTTCT AATTCTTGGA AAAATTCTGG 1321 GTGAAGGAGA GTTTGGGTCT GTAATGGAAG GAAATCTTAA GCAGGAAGAT GGGACCTCTC 1381 TGAAAGTGGC AGTGAAGACC ATGAAGTTGG ACAACTCTTC GCAGCGGGAG ATCGAGGAGT 1441 TTCTCAGTGA GGCAGCGTGC ATGAAAGACT TCAGCCACCC AAATGTCATT CGACTTCTAG 1501 GTGTGTGTAT AGAAATGAGC TCTCAAGGCA TCCCAAAGCC CATGGTAATT TTACCCTTCA 1561 TGAAATACGG GGACCTGCAT ACTTACTTAC TTTATTCCCG ATTGGAGACA GGACCAAAGC 1621 ATATTCCTCT GCAGACACTA TTGAAGTTCA TGGTGGATAT TGCCCTGGGA ATGGAGTATC 1681 TGAGCAACAG GAATTTTCTT CATCGAGATT TAGCTGCTCG AAACTGCATG TTGCGAGATG 1741 ACATGACTGT CTGTGTTGCG GACTTCGGCC TCTCTAAGAA GATTTACAGT GGCGATTATT 1801 ACCGCCAAGG CCGCATTGCT AAGATGCCTG TTAAATGGAT CGCCATAGAA AGTCTTGCAG 1861 ACCGAGTCTA CACAAGTAAA AGTGATGTGT GGGCATTTGG CGTGACCATG TGGGAAATAG 1921 CTACGCGGGG AATGACTCCC TATCCTGGGG TCCAGAACCA TGAGATGTAT GACTATCTTC 1981 TCCATGGCCA CAGGTTGAAG CAGCCCGAAG ACTGCCTGGA TGAACTGTAT GAAATAATGT 2041 ACTCTTGCTG GAGAACCGAT CCCTTAGACC GCCCCACCTT TTCAGTATTG AGGCTGCAGC 2101 TAGAAAAACT CTTAGAAAGT TTGCCTGACG TTCGGAACCA AGCAGACGTT ATTTACGTCA 2161 ATACACAGTT GCTGGAGAGC TCTGAGGGCC TGGCCCAGGG CTCCACCCTT GCTCCACTGG 2221 ACTTGAACAT CGACCCTGAC TCTATAATTG CCTCCTGCAC TCCCCGCGCT GCCATCAGTG 2281 TGGTCACAGC AGAAGTTCAT GACAGCAAAC CTCATGAAGG ACGGTACATC CTGAATGGGG 2341 GCAGTGAGGA ATGGGAAGAT CTGACTTCTG CCCCCTCTGC TGCAGTCACA GCTGAAAAGA 2401 ACAGTGTTTT ACCGGGGGAG AGACTTGTTA GGAATGGGGT CTCCTGGTCC CATTCGAGCA 2461 TGCTGCCCTT GGGAAGCTCA TTGCCCGATG AACTTTTGTT TGCTGACGAC TCCTCAGAAG 2521 GCTCAGAAGT CCTGATGTTG CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 2581 gcttatcaat ttgttgcaac gaac