Construct: ORF ccsbBroadEn_11569
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005994.1_s300c1, BRDN0000398518
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- UTS2 (10911)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10911 | UTS2 | urotensin 2 | XM_017000118.1 | 82.4% | 77.2% | (many diffs) |
| 2 | human | 10911 | UTS2 | urotensin 2 | NM_006786.4 | 74.5% | 71.7% | (many diffs) |
| 3 | human | 10911 | UTS2 | urotensin 2 | XM_011540538.1 | 74.5% | 71.7% | (many diffs) |
| 4 | human | 10911 | UTS2 | urotensin 2 | NM_021995.2 | 67.6% | 64% | 1_112del;126_148del |
| 5 | human | 10911 | UTS2 | urotensin 2 | XM_011540537.2 | 67.6% | 64% | 1_112del;126_148del |
| 6 | human | 10911 | UTS2 | urotensin 2 | XM_017000117.1 | 63.7% | 57.1% | (many diffs) |
| 7 | human | 10911 | UTS2 | urotensin 2 | XM_017000116.1 | 58.5% | 51.6% | (many diffs) |
| 8 | human | 10911 | UTS2 | urotensin 2 | XM_017000119.1 | 42.3% | 36.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 351
- ORF length:
- 282
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GATTTATTGC TCACCTCATG AAGACGCGCG CTTAACTCCG GAGGAGCTAG 121 AAAGAGCTTC CCTTCTACAG ATACTGCCAG AGATGCTGGG TGCAGAAAGA GGGGATATTC 181 TCAGGAAAGC AGACTCAAGT ACCAACATTT TTAACCCAAG AGGAAATTTG AGAAAGTTTC 241 AGGATTTCTC TGGACAAGAT CCTAACATTT TACTGAGTCA TCTTTTGGCC AGAATCTGGA 301 AACCATACAA GAAACGTGAG ACTCCTGATT GCTTCTGGAA ATACTGTGTC TTGCCAACTT 361 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac