Construct: ORF ccsbBroadEn_11587
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002272.1_s300c1, BRDN0000396056
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- OGFR (11054)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 11054 | OGFR | opioid growth factor receptor | NM_007346.4 | 96.9% | 97% | 1639_1698del;1818G>A |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2037
- ORF length:
- 1971
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA CGACCCCGAC TGCGACTCCA CCTGGGAGGA GGACGAGGAG GATGCGGAGG 121 ACGCGGAGGA CGAGGACTGC GAGGACGGCG AGGCCGCCGG CGCGAGGGAC GCGGACGCAG 181 GGGACGAGGA CGAGGAGTCG GAGGAGCCGC GGGCGGCGCG GCCCAGCTCG TTCCAGTCCA 241 GAATGACAGG GTCCAGAAAC TGGCGAGCCA CGAGGGACAT GTGTAGGTAT CGGCACAACT 301 ATCCGGATCT GGTGGAACGA GACTGCAATG GGGACACGCC AAACCTGAGT TTCTACAGAA 361 ATGAGATCCG CTTCCTGCCC AACGGCTGTT TCATTGAGGA CATTCTTCAG AACTGGACGG 421 ACAACTATGA CCTCCTTGAG GACAATCACT CCTACATCCA GTGGCTGTTT CCTCTGCGAG 481 AACCAGGAGT GAACTGGCAT GCCAAGCCCC TCACGCTCAG GGAGGTCGAG GTGTTTAAAA 541 GCTCCCAGGA GATCCAGGAG CGGCTTGTCC GGGCCTACGA GCTCATGCTG GGCTTCTACG 601 GGATCCGGCT GGAGGACCGA GGCACGGGCA CGGTGGGCCG AGCACAGAAC TACCAGAAGC 661 GCTTCCAGAA CCTGAACTGG CGCAGCCACA ACAACCTCCG CATCACACGC ATCCTCAAGT 721 CGCTGGGTGA GCTGGGCCTC GAGCACTTCC AGGCGCCGCT GGTCCGCTTC TTCCTGGAGG 781 AGACGCTGGT GCGGCGGGAG CTGCCGGGGG TGCGGCAGAG TGCCCTGGAC TACTTCATGT 841 TCGCCGTGCG CTGCCGACAC CAGCGCCGCC AGCTGGTGCA CTTCGCCTGG GAGCACTTCC 901 GGCCCCGCTG CAAGTTCGTC TGGGGGCCCC AAGACAAGCT GCGGAGGTTC AAGCCCAGCT 961 CTCTGCCCCA TCCGCTCGAG GGCTCCAGGA AGGTGGAGGA GGAAGGAAGC CCCGGGGACC 1021 CCGACCACGA GGCCAGCACC CAGGGTCGGA CCTGTGGGCC AGAGCATAGC AAGGGTGGGG 1081 GCAGGGTGGA CGAGGGGCCC CAGCCACGGA GCGTGGAGCC CCAGGATGCG GGACCCCTGG 1141 AGAGGAGCCA GGGGGATGAG GCAGGGGGCC ACGGGGAAGA TAGGCCGGAG CCCTTAAGCC 1201 CCAAAGAGAG CAAGAAGAGG AAGCTGGAGC TGAGCCGGCG GGAGCAGCCG CCCACAGAGC 1261 CAGGCCCTCA GAGTGCCTCA GAGGTGGAGA AGATCGCTCT GAATTTGGAG GGGTGTGCCC 1321 TCAGCCAGGG CAGCCTCAGG ACGGGGACCC AGGAAGTGGG CGGTCAGGAC CCTGGGGAGG 1381 CAGTGCAGCC CTGCCGCCAA CCCCTGGGAG CCAGGGTGGC CGACAAGGTG AGGAAGCGGA 1441 GGAAGGTGGA TGAGGGTGCT GGGGACAGTG CTGCGGTGGC CAGTGGTGGT GCCCAGACCT 1501 TGGCCCTTGC CGGGTCCCCT GCCCCATCGG GGCACCCCAA GGCTGGACAC AGTGAGAACG 1561 GGGTTGAGGA GGACACAGAA GGTCGAACGG GGCCCAAAGA AGGTACCCCT GGGAGCCCAT 1621 CGGAGACCCC AGGCCCCAGC CCAGCAGGAC CTGCAGGGGA CGAGCCAGCC GAGAGCCCAT 1681 CGGAGACCCC AGGCCCCCGC CCAGCAGGAC CTGCAGGGGA CGAGCCAGCC GAGAGCCCAT 1741 CGGAGACCCC AGGCCCCAGC CCGGCAGGAC CTACAAGGGA TGAGCCAGCC GAGAGCCCAT 1801 CGGAGACCCC AGGCCCCCGC CCAGCAGGAC CTGCAGGGGA CGAGCCAGCC GAGAGCCCAT 1861 CGGAGACCCC AGGCCCCCGC CCGGCAGGAC CTGCAGGGGA CGAGCCAGCC GAGAGCCCAT 1921 CGGAGACCCC AGGCCCCAGC CCGGCAGGAC CTACAAGGGA TGAGCCAGCC AAGGCGGGGG 1981 AGGCAGCAGA GTTGCAGGAC GCAGAGGTGG AGTCTTCTGC CAAGTCTGGG AAGCCTTACC 2041 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 2101 aac