Construct: ORF ccsbBroadEn_11596
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003218.1_s300c1, BRDN0000397130
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PRDM5 (11107)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 11107 | PRDM5 | PR/SET domain 5 | XM_005262708.3 | 31.5% | 28.4% | (many diffs) |
| 2 | human | 11107 | PRDM5 | PR/SET domain 5 | NM_001300824.1 | 21.8% | 19.8% | (many diffs) |
| 3 | human | 11107 | PRDM5 | PR/SET domain 5 | XM_017007669.1 | 20.5% | 18.6% | (many diffs) |
| 4 | human | 11107 | PRDM5 | PR/SET domain 5 | XM_017007670.1 | 20.5% | 18.6% | (many diffs) |
| 5 | human | 11107 | PRDM5 | PR/SET domain 5 | XM_011531567.2 | 20.1% | 18.2% | (many diffs) |
| 6 | human | 11107 | PRDM5 | PR/SET domain 5 | XM_011531568.2 | 20.1% | 18.2% | (many diffs) |
| 7 | human | 11107 | PRDM5 | PR/SET domain 5 | XM_011531569.3 | 20.1% | 18.2% | (many diffs) |
| 8 | human | 11107 | PRDM5 | PR/SET domain 5 | XM_011531565.2 | 18.5% | 16.8% | (many diffs) |
| 9 | human | 11107 | PRDM5 | PR/SET domain 5 | XM_011531566.3 | 18.5% | 16.8% | (many diffs) |
| 10 | human | 11107 | PRDM5 | PR/SET domain 5 | NM_001300823.1 | 18.2% | 16.6% | (many diffs) |
| 11 | human | 11107 | PRDM5 | PR/SET domain 5 | XM_011531564.2 | 18% | 16.4% | (many diffs) |
| 12 | human | 11107 | PRDM5 | PR/SET domain 5 | XM_011531563.2 | 17.9% | 16.3% | (many diffs) |
| 13 | human | 11107 | PRDM5 | PR/SET domain 5 | NM_018699.3 | 17.3% | 15.8% | (many diffs) |
| 14 | human | 11107 | PRDM5 | PR/SET domain 5 | XM_011531562.2 | 17% | 15.5% | (many diffs) |
| 15 | human | 11107 | PRDM5 | PR/SET domain 5 | XR_938680.2 | 16.6% | (many diffs) | |
| 16 | human | 11107 | PRDM5 | PR/SET domain 5 | XR_938678.1 | 16.1% | (many diffs) | |
| 17 | human | 11107 | PRDM5 | PR/SET domain 5 | XR_938679.1 | 15.5% | (many diffs) | |
| 18 | human | 11107 | PRDM5 | PR/SET domain 5 | XR_938677.3 | 15.4% | (many diffs) | |
| 19 | human | 11107 | PRDM5 | PR/SET domain 5 | XM_017007668.2 | 12.7% | 10.7% | (many diffs) |
| 20 | mouse | 70779 | Prdm5 | PR domain containing 5 | XM_006506602.3 | 28.1% | 29.5% | (many diffs) |
| 21 | mouse | 70779 | Prdm5 | PR domain containing 5 | NM_029549.1 | 23.5% | 23.6% | (many diffs) |
| 22 | mouse | 70779 | Prdm5 | PR domain containing 5 | XM_011241464.2 | 20% | 19.4% | (many diffs) |
| 23 | mouse | 70779 | Prdm5 | PR domain containing 5 | NM_027547.2 | 16.7% | 16.2% | (many diffs) |
| 24 | mouse | 70779 | Prdm5 | PR domain containing 5 | XM_006506604.3 | 15.9% | 15.4% | (many diffs) |
| 25 | mouse | 70779 | Prdm5 | PR domain containing 5 | XR_377493.3 | 14.8% | (many diffs) | |
| 26 | mouse | 70779 | Prdm5 | PR domain containing 5 | XR_377492.3 | 13.6% | (many diffs) | |
| 27 | mouse | 70779 | Prdm5 | PR domain containing 5 | XR_377491.3 | 10.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 399
- ORF length:
- 333
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCT GGGCATGTAC GTGCCGGACA GGTTCTCCCT GAAGTCCTCC CGGGTTCAGG 121 ACGGCATGGG GCTCTACACG GCCCGCAGAG TGCGAAAGGG TGAAAAGTTC GGACCCTTTG 181 CTGGAGAGAA GAGAATGCCT GAAGACTTGG ATGAAAATAT GGATTACAGG TTGATGTGGG 241 AGGTTCGTGG GAGTAAGGGA GAAGTTTTGT ACATTTTGGA TGCTACCAAC CCACGGCACT 301 CCAACTGGCT TCGCTTCGTT CATGAGGCAC CATCTCAGGA GCAGAAGAAC TTGGCTGCCA 361 TTCAAGACAA GAATTTGGGA CCCGCCGAAT GGCGAGGCTA CCCAACTTTC TTGTACAAAG 421 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac