Construct: ORF ccsbBroadEn_11632
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001850.1_s300c1, BRDN0000396927
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- COBLL1 (22837)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 22837 | COBLL1 | cordon-bleu WH2 repeat prot... | NM_001278461.2 | 8% | 6.9% | (many diffs) |
| 2 | human | 22837 | COBLL1 | cordon-bleu WH2 repeat prot... | NM_001365672.2 | 8% | 6.9% | (many diffs) |
| 3 | human | 22837 | COBLL1 | cordon-bleu WH2 repeat prot... | NM_001365673.2 | 8% | 6.9% | (many diffs) |
| 4 | human | 22837 | COBLL1 | cordon-bleu WH2 repeat prot... | NM_001365674.2 | 7.9% | 6.9% | (many diffs) |
| 5 | human | 22837 | COBLL1 | cordon-bleu WH2 repeat prot... | NM_001365675.2 | 7.9% | 6.9% | (many diffs) |
| 6 | human | 22837 | COBLL1 | cordon-bleu WH2 repeat prot... | NM_001365671.1 | 7.8% | 6.7% | (many diffs) |
| 7 | human | 22837 | COBLL1 | cordon-bleu WH2 repeat prot... | NM_014900.5 | 7.8% | 6.7% | (many diffs) |
| 8 | human | 22837 | COBLL1 | cordon-bleu WH2 repeat prot... | NM_001365670.2 | 7.7% | 6.7% | (many diffs) |
| 9 | human | 22837 | COBLL1 | cordon-bleu WH2 repeat prot... | NM_001278460.2 | 7.7% | 6.7% | (many diffs) |
| 10 | human | 22837 | COBLL1 | cordon-bleu WH2 repeat prot... | NM_001278458.2 | 7.3% | 6.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 384
- ORF length:
- 318
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA CGGCCGAACC CCGCGCCCGC AGGACGCCCC AGCCAGGAGA AAACCAAAAG 121 CCAAGGCACC ACTTCCTCCA GCTGAGACCA AATATACTGA TGTCTCTTCA GCTGCTGATT 181 CTGTAGAATC CACTGCTTTC ATCATGGAAC AGAAAGAAAA CATGATAGAT AAAGACGTTG 241 AACTCTCAGT GGTCCTACCT GGGGATATTA TCAAATCTAC TACTGTTCAT GGCAGGTACG 301 CTGGAGTAAA TGAAATATCA GGACCTCCCC TTCTTATTCC ACCATTGAAA GTCTCTGTGA 361 TATACGTCTT GATGTTTGTT CTTTGCCCAA CTTTCTTGTA CAAAGTtggc attataagaa 421 agcattgctt atcaatttgt tgcaacgaac