Construct: ORF ccsbBroadEn_11662

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010615.1_s300c1, BRDN0000387012
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SAMD4A (23034)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23034 SAMD4A sterile alpha motif domain ... NM_001161576.2 38.3% 37.5% (many diffs)
2 human 23034 SAMD4A sterile alpha motif domain ... XM_024449517.1 36.3% 35.5% (many diffs)
3 human 23034 SAMD4A sterile alpha motif domain ... NM_015589.6 33.9% 33.2% (many diffs)
4 human 23034 SAMD4A sterile alpha motif domain ... XM_024449516.1 33.2% 32.6% (many diffs)
5 human 23034 SAMD4A sterile alpha motif domain ... XM_024449514.1 32.2% 31.6% (many diffs)
6 human 23034 SAMD4A sterile alpha motif domain ... XM_024449515.1 32.2% 31.6% (many diffs)
7 human 23034 SAMD4A sterile alpha motif domain ... XM_024449519.1 21.1% 20.4% (many diffs)
8 human 23034 SAMD4A sterile alpha motif domain ... XM_024449518.1 18.9% 18.3% (many diffs)
9 mouse 74480 Samd4 sterile alpha motif domain ... NM_028966.3 36.5% 36.6% (many diffs)
10 mouse 74480 Samd4 sterile alpha motif domain ... NM_001037221.2 32.1% 32.4% (many diffs)
11 mouse 74480 Samd4 sterile alpha motif domain ... XM_006519627.2 30.2% 30% (many diffs)
12 mouse 74480 Samd4 sterile alpha motif domain ... NM_001163433.1 18.5% 18.5% (many diffs)
13 mouse 74480 Samd4 sterile alpha motif domain ... XM_006519628.2 17.4% 17.1% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
807
ORF length:
741
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAT GTTTCGCGAC CAGGTCGGGG TGCTGGCGGG CTGGTTTAAG GGCTGGAACG
121AGTGCGAGCA GACTGTTGCG CTGCTGTCGC TGCTCAAGCG CGTGAGCCAG ACCCAGGCCC
181GCTTCCTCCA GCTCTGCCTG GAGCACTCGC TGGCCGACTG CGCCGAGCTG CACGTCCTCG
241AACGCGAGGC CAACAGCCCC GGAATCATTA ACCAATGGCA ACAGGAATCC AAGGATAAAG
301TGATTTCCCT CCTGTTAACT CATCTGCCTT TGCTGAAGCC AGGAAACCTC GACGCGAAAG
361TAGAATATAT GAAACTGCTG CCCAAAACCC TGGCTCACTC TATTGAACAC AACCAGCACA
421TTGAGGAGAG CAGGCAGCTG CTGTCCTATG CTTTGATACA TCCAGCCACT TCGTTAGAAG
481ACCGTAGTGC TTTAGCCATG TGGCTGAATC ACTTGGAGGA CCGCACGTCG ACCAGCTTTG
541GTGGCCAGAA CCGAGGCCGC TCAGACTCTG TGGATTATGG ACAGACACAC TACTATCACC
601AAAGACAGAA CTCTGATGAC AAGCTCAATG GGTGGCAGAA CTCTCGGGAT TCTGGGATTT
661GCATCAATGC CTCCAACTGG CAGGACAAAA GCATGGGGTG TGAGAATGGC CATGTGCCCC
721TCTACTCCTC CTCATCTGTC CCCACCACAA TCAATACGAT TGGAACCAGC ACAAGTACAA
781GTAAGTTCCC CGGAATCCCT TTAACGTACC CAACTTTCTT GTACAAAGTt ggcattataa
841gaaagcattg cttatcaatt tgttgcaacg aac

Download FASTA (ORF) (Full)