Construct: ORF ccsbBroadEn_11668

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003634.1_s300c1, BRDN0000388406
DNA Barcode:
None
Epitope Tag:
None
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
TBC1D9B (23061)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23061 TBC1D9B TBC1 domain family member 9B NM_015043.4 31.6% 31.5% 1_2526del;2743G>T;3305A>C
2 human 23061 TBC1D9B TBC1 domain family member 9B NM_198868.3 31.2% 31.1% (many diffs)
3 mouse 76795 Tbc1d9b TBC1 domain family, member 9B NM_029745.2 26.9% 28.1% (many diffs)
4 mouse 76795 Tbc1d9b TBC1 domain family, member 9B NM_001290759.1 26.7% 27.8% (many diffs)
5 mouse 76795 Tbc1d9b TBC1 domain family, member 9B NM_001290760.1 26.6% 27.7% (many diffs)
6 mouse 76795 Tbc1d9b TBC1 domain family, member 9B XM_006534458.3 25.9% 27.2% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1239
ORF length:
1173
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttgGNATGGC CGGCCGTCGG GACCCCAGCC TGCCCTACCT GGAGCAGTAC CGGATTGATG
121CCAGCCAGTT CCGGGAACTC TTTGCCAGCC TGACACCCTG GGCCTGTGGC TCCCACACAC
181CTCTGCTGGC AGGGCGCATG TTCAGGCTCC TGGACGAAAA CAAGGACTCG CTGATCAACT
241TCAAGGAGTT CGTGACAGGG ATGAGCGGGA TGTACCACGG GTACCTGACA GAGAAGCTCA
301AGGTGCTCTA CAAGCTACAC CTTCCCCCAG CTCTGAGCCC AGAGGAAGCC GAGTCAGCCC
361TGGAGGCGGC CCATTATTTC ACAGAGGACA GCTCCTCAGA AGAAGCACTA CCACAGGAAG
421AGCAAGAAGG AAGTGGAAGT GAGGAGAGAG GAGAGGAGAA GGGGACCAGC TCTCCGGACT
481ATCGGCACTA CCTTCGAATG TGGGCCAAGG AGAAAGAGGC TCAGAAGGAG ACGATTAAGG
541ATCTTCCCAA GATGAACCAG GAGCAGTTCA TTGAGCTGTG CAAGACGCTT TACAACATGT
601TCAGTGAAGA CCCCATGGAG CAGGACCTGT ACCACGCCAT CGCCACCGTG GCCAGCCTCC
661TGCTCCGCAT CGGAGAGGTG GGGAAGAAGT TCTCAGCCCG CACAGGCAGG AAGCCCAGGG
721ACTGTGCCAC TGAGGAGGAC GAGCCACCAG CACCCGAACT GCATCAGGAC GCAGCCAGGG
781AGCTTCAGCC CCCAGCTGCA GGAGACCCCC AAGCCAAAGC AGGCGGAGAC ACACACCTCG
841GAACAGCCCC ACAGGAGAGC CAGGTGGTGG TGGAGGGGGG CAGCGGCGAG GGACAGGGCT
901CACCCTCCCA GCTGCTGTCT GACGATGAAA CCAAAGACGA CATGTCCATG TCCTCCTACT
961CGGTGGTCAG CACGGGCTCC CTGCAATGTG AAGACCTTGC AGACGACACG GTGCTGGTGG
1021GCGGGGAGGC CTGCAGCCCC ACAGCGCGCA TCGGCGGCAC CGTCGACACC GACTGGTGCA
1081TCTCCTTTGA GCAGATCCTG GCCTCCATCC TGACGGAGTC CGTGCTGGTG AACTTCTTTG
1141AGAAGAGAGT GGACATTGGA CTCAAGATCA AGGACCAAAA GAAAGTGGAG AGACAGTTCA
1201GCACCGCCAG TGACCATGAG CAGCCTGGAG TTTCCGGCTG ATcaactttc ttgtacaaag
1261ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)