Construct: ORF ccsbBroadEn_11671
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002396.1_s300c1, BRDN0000389389
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ERC1 (23085)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23085 | ERC1 | ELKS/RAB6-interacting/CAST ... | NR_027949.3 | 3.2% | 1_4983del;5110C>G;5257_8485del | |
| 2 | human | 23085 | ERC1 | ELKS/RAB6-interacting/CAST ... | XR_001748635.1 | 2.9% | 1_5784del;5911C>G;6058_9286del | |
| 3 | human | 23085 | ERC1 | ELKS/RAB6-interacting/CAST ... | NR_027946.3 | 2.9% | 1_5832del;5959C>G;6106_9334del | |
| 4 | human | 23085 | ERC1 | ELKS/RAB6-interacting/CAST ... | XR_001748637.1 | 2.9% | 1_5876del;6003C>G;6150_9378del | |
| 5 | human | 23085 | ERC1 | ELKS/RAB6-interacting/CAST ... | XR_001748636.1 | 2.8% | 1_5885del;6012C>G;6159_9387del | |
| 6 | human | 23085 | ERC1 | ELKS/RAB6-interacting/CAST ... | NR_027948.3 | 2.8% | 1_5964del;6091C>G;6238_9466del | |
| 7 | human | 23085 | ERC1 | ELKS/RAB6-interacting/CAST ... | XR_001748633.1 | 2.8% | 1_6005del;6132C>G;6279_9507del | |
| 8 | human | 23085 | ERC1 | ELKS/RAB6-interacting/CAST ... | XR_001748632.1 | 2.8% | 1_6017del;6144C>G;6291_9519del | |
| 9 | human | 23085 | ERC1 | ELKS/RAB6-interacting/CAST ... | XR_001748634.1 | 2.8% | 1_6113del;6240C>G;6387_9615del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 339
- ORF length:
- 273
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC TAAACAAGTG GTCTGGCACG GGCACTGGCC AGCTGCTCTC TCCAAGCAGG 121 TGGCCCAGAT CCCACCCACG TGGACTTTCT CATCAGGTGC AGCGCCTGCC ACTCTCAGCC 181 ACTGGGTGTG TGACTCTCCT CTTCATCTCA GCATTCTCCA TCACTTCCCC TCCAGAAAAA 241 CGGATGGAAG GAAGCCCTCT GTGACACTGC TTCTGAGAAG AAGCATTTCC GGGACCGATA 301 TCATCTGTCT GGTCTCTGTG AACAGCAAGG AATCTTCTTG CCCAACTTTC TTGTACAAAG 361 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac