Transcript: Human NR_027948.3

Homo sapiens ELKS/RAB6-interacting/CAST family member 1 (ERC1), transcript variant beta, non-coding RNA.

Source:
NCBI, updated 2019-07-31
Taxon:
Homo sapiens (human)
Gene:
ERC1 (23085)
Length:
9466
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_027948.3
NBCI Gene record:
ERC1 (23085)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_027948.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000154579 GCGGACAATTGAACGCTTAAA pLKO.1 2215 3UTR 100% 13.200 18.480 N ERC1 n/a
2 TRCN0000154825 GCTTGAAAGAACGGGTCAAAT pLKO.1 2124 3UTR 100% 13.200 18.480 N ERC1 n/a
3 TRCN0000155098 GCTAGTGACACCATAGCATTT pLKO.1 776 3UTR 100% 10.800 15.120 N ERC1 n/a
4 TRCN0000155567 CCCTATGTATCTAAGTGACCA pLKO.1 631 3UTR 100% 2.640 3.696 N ERC1 n/a
5 TRCN0000150816 GCAAGGACTTTGATACCATTT pLKO.1 6724 3UTR 100% 10.800 7.560 N ERC1 n/a
6 TRCN0000150373 CAGGAACTAGAATCCATGAAA pLKO.1 3005 3UTR 100% 5.625 3.938 N ERC1 n/a
7 TRCN0000157699 CAGGCCAAAGAGCTGTTTCTT pLKO.1 1250 3UTR 100% 5.625 3.938 N ERC1 n/a
8 TRCN0000157836 CCCTAAATGCTCGGGATGAAT pLKO.1 1323 3UTR 100% 5.625 3.938 N ERC1 n/a
9 TRCN0000151917 CAAAGCTAGAAACACTCACAA pLKO.1 1797 3UTR 100% 4.950 3.465 N ERC1 n/a
10 TRCN0000155302 GCAGAAGTTGATCGACTCTTA pLKO.1 2603 3UTR 100% 4.950 3.465 N ERC1 n/a
11 TRCN0000157886 CCAGAGATGAGTGACCGAATA pLKO.1 2528 3UTR 100% 10.800 6.480 N ERC1 n/a
12 TRCN0000139012 CGCCTGTAATCCCAGAACTTT pLKO.1 6815 3UTR 100% 5.625 2.813 Y CCDC57 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_027948.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11671 pDONR223 100% 2.8% None 1_5964del;6091C>G;6238_9466del n/a
2 ccsbBroad304_11671 pLX_304 0% 2.8% V5 1_5964del;6091C>G;6238_9466del n/a
3 TRCN0000479129 ACGATACTGGAACCGGAGAAGTTA pLX_317 100% 2.8% V5 1_5964del;6091C>G;6238_9466del n/a
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