Construct: ORF ccsbBroadEn_11699
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001256.1_s300c1, BRDN0000390787
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SYNE2 (23224)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23224 | SYNE2 | spectrin repeat containing ... | XM_011536584.2 | 7.2% | 6.9% | (many diffs) |
| 2 | human | 23224 | SYNE2 | spectrin repeat containing ... | XR_001750198.1 | 5.5% | (many diffs) | |
| 3 | human | 23224 | SYNE2 | spectrin repeat containing ... | XM_005267459.1 | 4% | 3.8% | (many diffs) |
| 4 | human | 23224 | SYNE2 | spectrin repeat containing ... | NM_015180.5 | 4% | 3.8% | (many diffs) |
| 5 | human | 23224 | SYNE2 | spectrin repeat containing ... | XM_011536582.1 | 4% | 3.8% | (many diffs) |
| 6 | human | 23224 | SYNE2 | spectrin repeat containing ... | XM_005267458.1 | 4% | 3.8% | (many diffs) |
| 7 | human | 23224 | SYNE2 | spectrin repeat containing ... | NM_182914.2 | 4% | 3.8% | (many diffs) |
| 8 | human | 23224 | SYNE2 | spectrin repeat containing ... | XM_005267457.1 | 4% | 3.8% | (many diffs) |
| 9 | human | 23224 | SYNE2 | spectrin repeat containing ... | XM_011536581.1 | 4% | 3.8% | (many diffs) |
| 10 | human | 23224 | SYNE2 | spectrin repeat containing ... | XM_005267456.1 | 4% | 3.8% | (many diffs) |
| 11 | human | 23224 | SYNE2 | spectrin repeat containing ... | XM_011536580.2 | 4% | 3.8% | (many diffs) |
| 12 | human | 23224 | SYNE2 | spectrin repeat containing ... | XM_005267454.1 | 4% | 3.8% | (many diffs) |
| 13 | human | 23224 | SYNE2 | spectrin repeat containing ... | XM_011536579.1 | 4% | 3.8% | (many diffs) |
| 14 | human | 23224 | SYNE2 | spectrin repeat containing ... | XM_011536578.1 | 3.9% | 3.8% | (many diffs) |
| 15 | human | 23224 | SYNE2 | spectrin repeat containing ... | XM_011536574.1 | 3.9% | 3.8% | (many diffs) |
| 16 | human | 23224 | SYNE2 | spectrin repeat containing ... | XM_011536575.2 | 3.9% | 3.8% | (many diffs) |
| 17 | human | 23224 | SYNE2 | spectrin repeat containing ... | XM_011536576.2 | 3.9% | 3.8% | (many diffs) |
| 18 | human | 23224 | SYNE2 | spectrin repeat containing ... | XM_011536577.2 | 3.9% | 3.8% | (many diffs) |
| 19 | human | 23224 | SYNE2 | spectrin repeat containing ... | XM_017021101.1 | 3.9% | 3.8% | (many diffs) |
| 20 | human | 23224 | SYNE2 | spectrin repeat containing ... | XM_017021102.1 | 3.6% | 3.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 921
- ORF length:
- 855
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC ATCTAGTCCT GAGCTTCCCA CCGAAGATGA ACAGGGTTCC TGGGGCATCG 121 ACGATCTCCA TATTTCATTG CAAGCTGAAC AGGAAGACAC CCAGAAGAAA GCCTTCACGT 181 GCTGGATAAA CTCACAGTTG GCCAGGCACA CTTCTCCCTC AGTTATATCC GACCTATTCA 241 CAGACATTAA AAAGGGGCAT GTCCTCCTGG ATCTGCTAGA AGTACTTTCT GGGCAACAGT 301 TGCCTCGGGA TAAAGGATCT AATACCTTCC AGTGTAGAAT CAATATAGAA CATGCCTTGA 361 CATTCCTAAG AAACCGATCA ATTAAGCTAA TAAATATTCA TGTTACTGAT ATCATTGATG 421 GAAACCCATC CATTATCCTT GGCCTAATTT GGACAATTAT CCTGCACTTT CATATTGAGA 481 AGCTTGCCCA GACTCTTTCT TGCAATTACA ATCAGCCTTC CCTGGATGAT GTGAGTGTGG 541 TTGACTCATC TCCTGCCTCA AGTCCTCCAG CTAAGAAATG CTCTAAAGTG CAAGCAAGAT 601 GGCAAATGTC TGCAAGAAAG GCCCTTCTTT TGTGGGCTCA GGAACAATGC GCCACCTATG 661 AGTCTGTCAA TGTGACCGAT TTTAAGTCAA GTTGGAGAAA TGGGATGGCT TTTTTGGCCA 721 TCATTCATGC CTTGCGACCA GACCTAATTG ACATGAAGAG TGTGAAGCAT AGATCCAACA 781 AAGACAATCT GAGAGAGGCC TTCAGAATTG CAGAACAAGA ATTAAAAATC CCCAGATTGC 841 TGGAACCAGA AGATGCCTGG AGAAGTTCTG CACTTTACAG AATTTATATG CCTGGCACAG 901 TGTCTTGTGC CAGCTACTTG TGCCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc 961 attgcttatc aatttgttgc aacgaac