Construct: ORF ccsbBroadEn_11778

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013915.1_s300c1, BRDN0000389434
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
POC1A (25886)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 25886 POC1A POC1 centriolar protein A NM_001161581.2 98.6% 98.6% 1_15del
2 human 25886 POC1A POC1 centriolar protein A NM_015426.5 89.4% 89.4% 1_129del
3 human 25886 POC1A POC1 centriolar protein A XM_017006104.1 85.6% 85.6% 1_15del;866_867ins144
4 human 25886 POC1A POC1 centriolar protein A XM_011533560.1 81.3% 81.3% 1_129del;882_883ins99
5 human 25886 POC1A POC1 centriolar protein A NM_001161580.2 77.6% 77.6% 1_129del;980_981ins144
6 human 25886 POC1A POC1 centriolar protein A XM_011533561.1 69.5% 69.5% 1_129del;882_883ins243
7 human 25886 POC1A POC1 centriolar protein A XM_011533562.2 62.9% 61.9% (many diffs)
8 human 25886 POC1A POC1 centriolar protein A XR_001740088.1 51% 1_169del;1021_1262del;1504_2140del
9 human 25886 POC1A POC1 centriolar protein A XR_940402.1 50.4% 1_169del;719_720ins134;1128_1764del
10 human 25886 POC1A POC1 centriolar protein A XM_011533563.1 49.8% 44.7% 1_129del;679_680ins134;738_739ins349
11 human 25886 POC1A POC1 centriolar protein A XM_011533564.3 49.8% 44.7% 1_129del;679_680ins134;738_739ins349
12 human 25886 POC1A POC1 centriolar protein A XM_011533565.2 49.8% 44.7% 1_129del;679_680ins134;738_739ins349
13 human 25886 POC1A POC1 centriolar protein A XR_940403.1 42.8% (many diffs)
14 mouse 70235 Poc1a POC1 centriolar protein A NM_027354.2 79.3% 81% (many diffs)
15 mouse 70235 Poc1a POC1 centriolar protein A XM_006511830.3 69.5% 64.6% (many diffs)
16 mouse 70235 Poc1a POC1 centriolar protein A XM_006511831.3 67.2% 66.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1158
ORF length:
1092
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGT CTGGCACATG AAGCCGCAGT CACGCGCCTA CCGCTTCACT GGCCACAAGG
121ATGCCGTCAC CTGTGTGAAC TTCTCTCCTT CGGGACACCT GCTTGCTTCC GGCTCCCGAG
181ACAAGACTGT CCGCATCTGG GTACCCAATG TCAAAGGTGA GTCCACTGTG TTTCGTGCAC
241ACACAGCCAC AGTGAGGAGT GTCCACTTCT GCAGTGATGG CCAGTCCTTC GTGACAGCCT
301CTGACGACAA GACAGTCAAA GTGTGGGCAA CTCATCGCCA GAAATTCCTG TTCTCCCTGA
361GCCAGCATAT CAACTGGGTC CGCTGTGCCA AGTTCTCCCC CGACGGGCGG CTCATCGTGT
421CTGCCAGTGA TGACAAGACT GTTAAGCTGT GGGACAAGAG CAGCCGGGAA TGTGTCCACT
481CGTATTGTGA GCATGGCGGC TTTGTCACCT ATGTGGACTT CCACCCCAGT GGGACGTGCA
541TTGCCGCTGC CGGCATGGAC AACACAGTGA AGGTGTGGGA CGTGCGGACT CACCGGCTGC
601TGCAGCATTA TCAGTTGCAC AGTGCAGCAG TGAACGGGCT CTCTTTCCAC CCGTCGGGAA
661ACTACCTGAT CACAGCCTCC AGTGACTCAA CCCTGAAGAT CCTGGACCTG ATGGAGGGCC
721GGCTGCTCTA CACACTCCAC GGGCATCAGG GACCAGCCAC CACTGTTGCC TTTTCAAGAA
781CGGGGGAGTA TTTTGCTTCT GGAGGCTCTG ATGAACAAGT GATGGTTTGG AAGAGTAACT
841TTGATATTGT TGATCATGGA GAAGTCACGA AAGTGCCGAG GCCCCCAGCC ACACTGGCCA
901GCTCCATGGG GAATCTGCCA GAAGTGGACT TCCCTGTCCC CCCAGGCAGA GGCAGGAGTG
961TGGAGTCTGT GCAGAGCCAG CCCCAGGAGC CCGTGAGTGT GCCCCAGACA CTGACTAGCA
1021CGCTGGAGCA CATTGTGGGC CAGCTGGATG TCCTCACTCA GACAGTCTCC ATTCTGGAGC
1081AGCGGTTGAC ACTGACAGAA GACAAGCTGA AGCAGTGTCT GGAGAACCAG CAGCTAATCA
1141TGCAGAGAGC AACACCATGC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt
1201gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)