Construct: ORF ccsbBroadEn_11784
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007480.1_s300c1, BRDN0000392978
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZDHHC5 (25921)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 25921 | ZDHHC5 | zinc finger DHHC-type conta... | XM_017017498.2 | 92.4% | 92.5% | 0_1ins147;688T>C;1194C>T |
| 2 | human | 25921 | ZDHHC5 | zinc finger DHHC-type conta... | NM_015457.3 | 92.4% | 92.5% | 1_159del;994T>C;1500C>T |
| 3 | human | 25921 | ZDHHC5 | zinc finger DHHC-type conta... | XM_011544899.1 | 92.4% | 92.5% | 1_159del;994T>C;1500C>T |
| 4 | human | 25921 | ZDHHC5 | zinc finger DHHC-type conta... | XM_011544900.1 | 92.4% | 92.5% | 1_159del;994T>C;1500C>T |
| 5 | human | 25921 | ZDHHC5 | zinc finger DHHC-type conta... | XM_011544901.1 | 92.4% | 92.5% | 1_159del;994T>C;1500C>T |
| 6 | human | 25921 | ZDHHC5 | zinc finger DHHC-type conta... | XR_001747825.2 | 42% | (many diffs) | |
| 7 | mouse | 228136 | Zdhhc5 | zinc finger, DHHC domain co... | NM_144887.4 | 85.5% | 90.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2052
- ORF length:
- 1986
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTT TCTCTTTGTG TTGGCCAACT TCAGCATGGC CACCTTCATG GACCCAGGGA 121 TTTTCCCTCG AGCTGAGGAG GATGAGGACA AGGAAGATGA TTTCCGAGCT CCCCTTTACA 181 AAACAGTGGA GATAAAGGGC ATCCAGGTGC GCATGAAATG GTGTGCCACC TGCCGCTTTT 241 ACCGTCCCCC TCGATGTTCC CACTGCAGTG TCTGTGACAA CTGTGTGGAG GAATTTGATC 301 ATCACTGCCC CTGGGTGAAT AACTGTATTG GTCGCCGGAA CTACCGTTAT TTTTTCCTTT 361 TCCTCCTTTC CCTGACAGCC CACATTATGG GTGTGTTTGG CTTTGGCCTC CTTTATGTCC 421 TCTACCACAT AGAGGAACTC TCAGGGGTCC GCACGGCTGT CACAATGGCA GTAATGTGTG 481 TGGCTGGCTT ATTCTTCATC CCTGTAGCTG GCCTCACGGG ATTTCACGTG GTTCTGGTGG 541 CCAGGGGACG CACAACCAAT GAACAGGTTA CGGGTAAATT CCGGGGAGGT GTGAACCCCT 601 TCACCAATGG CTGCTGTAAC AATGTCAGCC GTGTTCTCTG CAGTTCTCCA GCACCCAGGT 661 ATTTGGGGAG ACCAAAGAAA GAGAAGACAA TTGTAATCAG ACCTCCCTTC CTTCGACCAG 721 AAGTTTCAGA TGGGCAGATA ACTGTGAAGA TCATGGATAA TGGCATCCAG GGAGAGCTGA 781 GGAGAACAAA GTCTAAGGGA AGCCTGGAGA TAACAGAGAG CCAGTCTGCA GATGCTGAAC 841 CTCCACCTCC TCCTAAGCCA GACCTGAGCC GTTACACAGG GTTGCGAACA CACCTCGGCC 901 TGGCTACTAA TGAGGATAGT AGCTTATTGG CCAAGGACAG CCCCCCGACA CCTACCATGT 961 ACAAGTATCG GCCGGGTTAC AGTAGCAGCA GTACGTCAGC TGCCATGCCG CATTCCTCCA 1021 GCGCCAAGTT GAGTCGTGGG GACAGCTTGA AGGAGCCAAC CTCAATTGCA GAGAGCAGCC 1081 GTCACCCCAG CTACCGCTCA GAGCCCAGCT TGGAACCAGA GAGCTTCCGT TCTCCTACCT 1141 TTGGCAAAAG TTTTCACTTC GATCCACTAT CCAGTGGCTC ACGCTCCTCC AGCCTCAAGT 1201 CAGCCCAGGG CACAGGCTTT GAGCTGGGCC AGTTGCAATC CATTCGTTCA GAGGGCACCA 1261 CCTCCACCTC CTATAAGAGC CTGGCCAACC AGACACGCAA TGGAAGCCTA TCTTATGACA 1321 GCTTGCTCAC ACCTTCAGAC AGCCCTGATT TTGAGTCAGT GCAGGCAGGG CCTGAGCCAG 1381 ACCCACCTTT AGGCTATACC TCTCCTTTCC TGTCAGCCAG GCTGGCCCAG CAACGGGAAG 1441 CTGAGAGGCA CCCACGTTTG GTGCCAACTG GCCCAACACA CCGAGAGCCC TCACCAGTCC 1501 GTTACGACAA TCTGTCGCGC CACATTGTGG CCTCTCTCCA GGAACGAGAG AAGTTGCTGC 1561 GCCAGTCACC CCCACTCCCG GGCCGTGAGG AAGAACCAGG CTTGGGGGAC TCAGGCATTC 1621 AGTCAACACC AGGCTCGGGC CATGCCCCTC GTACTAGTTC CTCCTCAGAT GATTCAAAGA 1681 GATCACCTTT GGGCAAGACT CCACTGGGAC GCCCAGCTGT CCCCCGTTTT GGCAAGCCAG 1741 ATGGGCTAAG GGGCCGGGGA GTAGGGTCCC CTGAACCAGG CCCAACAGCC CCATACCTGG 1801 GCCGATCGAT GTCTTACAGC AGCCAAAAAG CCCAACCTGG TGTCTCTGAG ACAGAAGAAG 1861 TGGCCTTGCA GCCATTACTG ACACCCAAAG ATGAAGTACA GCTGAAGACC ACCTACAGCA 1921 AATCCAACGG GCAGCCCAAG AGCTTAGGCT CAGCCTCCCC TGGCCCAGGC CAGCCACCTC 1981 TCAGTAGCCC CACGAGGGGA GGAGTCAAGA AGGTGTCAGG GGTTGGTGGT ACCACCTATG 2041 AGATTTCGGT GTGCCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 2101 caatttgttg caacgaac