Construct: ORF ccsbBroadEn_11802

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005000.1_s300c1, BRDN0000457128
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PLEKHG3 (26030)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 26030 PLEKHG3 pleckstrin homology and Rho... XM_017021158.2 64% 64% 1_1263del;2623C>A
2 human 26030 PLEKHG3 pleckstrin homology and Rho... NM_001308147.2 61.6% 61.5% 1_1401del;1403A>T;2761C>A
3 human 26030 PLEKHG3 pleckstrin homology and Rho... XM_017021157.2 61.6% 61.5% 1_1401del;1403A>T;2761C>A
4 human 26030 PLEKHG3 pleckstrin homology and Rho... XM_024449528.1 61.6% 61.5% 1_1401del;1403A>T;2761C>A
5 human 26030 PLEKHG3 pleckstrin homology and Rho... XM_011536629.3 60.1% 60% 1_1491del;1493A>T;2851C>A
6 human 26030 PLEKHG3 pleckstrin homology and Rho... XM_017021154.2 56% 56% 1_1764del;3124C>A
7 human 26030 PLEKHG3 pleckstrin homology and Rho... XM_011536625.3 56% 55.9% 1_1768del;1769_1770insT;3127C>A
8 human 26030 PLEKHG3 pleckstrin homology and Rho... XM_011536628.3 54.8% 54.8% 1_1854del;3214C>A
9 human 26030 PLEKHG3 pleckstrin homology and Rho... XM_017021155.2 54.8% 54.8% 1_1854del;3214C>A
10 human 26030 PLEKHG3 pleckstrin homology and Rho... XM_017021156.2 54.8% 54.8% 1_1854del;3214C>A
11 human 26030 PLEKHG3 pleckstrin homology and Rho... XM_011536627.3 54% 53.9% 1_1917del;3277C>A
12 human 26030 PLEKHG3 pleckstrin homology and Rho... XR_002957542.1 22.3% 1_2020del;3380C>A;4277_10080del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2325
ORF length:
2256
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGGAAAGGGG CGCAGGGAGT CTGAAAGCTC CAGGAGCAGC AGAAGGCCCA
121GTGGCCGGTC TCCAACCAGT ACTGAGAAGC GCATGAGCTT CGAGTCCATT TCTTCCCTGC
181CAGAGGTTGA GCCGGACCCT GAGGCTGGGA GTGAGCAAGA GGTATTTTCT GCTGTGGAAG
241GGCCCAGTGC CGAGGAGACG CCTTCAGACA CAGAATCTCC AGAAGTCCTG GAGACACAGC
301TTGATGCCCA CCAGGGCCTT CTGGGGATGG ACCCCCCAGG TGACATGGTG GACTTCGTGG
361CAGCTGAGAG CACTGAGGAC CTTAAGGCCC TGAGCAGCGA GGAGGAAGAA GAAATGGGAG
421GTGCCGCCCA GGAGCCTGAG AGCCTTCTGC CACCCTCTGT GCTGGACCAG GCCAGCGTCA
481TTGCGGAGCG ATTTGTCAGC AGCTTCTCTC GGCGGAGCAG CGTGGCACAG GAGGACAGCA
541AGTCCAGTGG CTTTGGGAGC CCGCGGCTGG TCAGCCGGAG CAGCAGCGTG CTCAGCCTGG
601AGGGCAGCGA GAAGGGCCTG GCCCGGCATG GCAGTGCCAC AGACTCCCTC AGCTGTCAGC
661TCTCCCCAGA AGTGGACATC AGTGTGGGGG TGGCCACAGA GGACAGCCCT TCTGTCAATG
721GGATGGAGCC CCCAAGCCCA GGCTGCCCAG TGGAGCCTGA CCGGTCTTCC TGCAAGAAGA
781AGGAATCAGC ACTCTCCACC CGAGACCGGC TGTTGCTAGA CAAGATTAAG AGCTATTATG
841AAAATGCAGA ACACCATGAT GCAGGCTTCA GCGTCCGTCG CCGGGAGAGC CTCTCCTACA
901TCCCCAAAGG ACTGGTAAGA AACTCCATCT CCAGGTTCAA CAGCCTTCCC CGGCCAGACC
961CAGAGCCAGT ACCTCCAGTG GGGAGCAAGA GACAGGTGGG CTCCCGGCCG ACTTCGTGGG
1021CCCTGTTTGA GCTCCCAGGA CCAAGCCAGG CAGTCAAAGG GGACCCACCT CCCATCTCAG
1081ATGCTGAGTT CCGCCCATCT TCAGAAATTG TGAAGATCTG GGAGGGAATG GAGTCTTCCG
1141GAGGGAGCCC TGGGAAGGGG CCAGGCCAGG GCCAGGCCAA TGGCTTTGAC CTGCATGAGC
1201CACTCTTCAT CCTGGAGGAG CATGAGCTGG GAGCCATCAC AGAGGAGTCG GCCACTGCCT
1261CCCCGGAAAG CTCCTCTCCC ACTGAGGGGC GCAGCCCGGC CCACCTGGCC CGGGAGCTGA
1321AAGAGCTGGT GAAGGAGCTG AGCAGCAGTA CCCAGGGGGA GCTGGTGGCC CCACTGCACC
1381CCCGCATCGT GCAGCTCTCC CACGTAATGG ACAGCCACGT GAGCGAGAGC GTCAAGAACA
1441AGGTCTACCA GCTGGCCCGC CAGTACAGCC TCCGGATCAA GAGCAACAAG CCAGTGATGG
1501CCAGGCCACC ACTGCAGTGG GAAAAGGTGG CCCCTGAGAG GGATGGGAAG AGCCCCACTG
1561TGCCCTGTCT ACAGGAAGAG GCTGGAGAGC CATTAGGTGG CAAAGGTAAG AGGAAGCCGG
1621TGCTGTCTCT ATTTGACTAT GAGCAGCTGA TGGCCCAGGA GCACAGCCCT CCCAAGCCCT
1681CCTCGGCTGG GGAGATGTCA CCACAGCGTT TCTTCTTCAA CCCGTCTGCT GTCAGCCAGA
1741GGACCACCTC GCCTGGGGGC CGGCCCTCCG CCCGGAGCCC CCTCAGCCCC ACAGAGACCT
1801TCAGCTGGCC CGACGTCCGT GAGCTCTGCT CCAAGTATGC CTCCCGCGAT GAGGCACGCC
1861GAGCAGGGGG CGGCCGGCCC CGCGGCCCAC CCGTCAACAG GAGCCACTCG GTGCCGGAGA
1921ACATGGTAGA GCCACCTCTG TCGGGCAGGG TGGGCCGCTG CCGCAGCCTG AGCACCAAGA
1981GGGGCCGGGG AGGCGGAGAG GCTGCCCAAT CCCCTGGGCC TCTGCCCCAG AGCAAGCCGG
2041ATGGAGGCGA GACCCTGTAT GTCACTGCAG ACCTCACCCT GGAGGACAAC CGGCGGGTGA
2101TTGTCATGGA GAAGGGACCC CTTCCCAGCC CCACTGCAGG GCTGGAGGAG AGCAGTGGCC
2161AGGGACCAAG CTCACCGGTG GCCCTGCTGG GGCAGGTTCA GGACTTCCAG CAGTCTGCAG
2221AGTGCCAGCC GAAGGAAGAG GGTTCCAGGG ACCCGGCAGA CCCGAGCCAG CAGGGCAGAG
2281TGAGAAACCT TAGAGAGAAG TTCCAGGCCT TGAACTCTGT CGGTTTGCCA ACTTTCTTGT
2341ACAAAGTTGG cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)