Construct: ORF ccsbBroadEn_11803
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013718.1_s300c1, BRDN0000385466
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF451 (26036)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 26036 | ZNF451 | zinc finger protein 451 | XM_011514462.3 | 98% | 97.7% | (many diffs) |
| 2 | human | 26036 | ZNF451 | zinc finger protein 451 | XM_005248994.2 | 95.3% | 93.9% | (many diffs) |
| 3 | human | 26036 | ZNF451 | zinc finger protein 451 | NM_015555.2 | 89% | 86.2% | (many diffs) |
| 4 | human | 26036 | ZNF451 | zinc finger protein 451 | NM_001031623.3 | 87.5% | 86.3% | (many diffs) |
| 5 | human | 26036 | ZNF451 | zinc finger protein 451 | XM_011514460.2 | 84.9% | 83.7% | (many diffs) |
| 6 | human | 26036 | ZNF451 | zinc finger protein 451 | XM_011514461.2 | 82.4% | 80% | (many diffs) |
| 7 | human | 26036 | ZNF451 | zinc finger protein 451 | XR_241885.2 | 51.7% | (many diffs) | |
| 8 | human | 26036 | ZNF451 | zinc finger protein 451 | XR_001743329.1 | 49.8% | (many diffs) | |
| 9 | human | 26036 | ZNF451 | zinc finger protein 451 | XR_001743327.2 | 39.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2862
- ORF length:
- 2796
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TAGAAAAAAG 61 TTGGCATGGG AGACCCGGGG TCGGAGATAA TAGAATCTGT CCCTCCAGCT GGCCCTGAGG 121 CATCTGAGTC AACAACGGAT GAAAATGAAG ACGACATTCA GTTTGTCAGT GAAGGACCAT 181 TACGACCTGT TCTTGAATAC ATTGATCTGG TCAGCAGTGA TGATGAAGAG CCTAGCACCT 241 CTTATACTGA TGAGAATATT AAACGTAAAG ACCATATTGA TTATCAGAAG GATAAAGTTG 301 CTTTAACTCT GGCTCGTCTA GCCCGCCATG TTGAAGTGGA GAAACAGCAG AAAGAAGAGA 361 AGAATAGAGC ATTCAGAGAA AAAATTGATT TTCAGCATGC TCATGGGTTA CAAGAATTGG 421 AATTTATTCG AGGACATTCT GATACAGAAG CAGCAAGACT GTGTGTGGAC CAGTGGCTAA 481 AAATGCCAGG ACTCAAAACA GGCACAATTA ATTGTGGAAC AAAAAGTTCA TTCCGAAGAG 541 GAGGCCACAC GTGGGTGTCT GGGAAACCAA TTTTATGTCC TATAATGCAC TGTAACAAGG 601 AGTTTGACAA TGGGCACCTT CTCTTAGGAC ATTTGAAAAG GTTCGATCAC TCTCCATGTG 661 ATCCAACAAT TACACTACAT GGACCTTTCT TCAGCTCCTT TGCTTGTGTA GTATGTTATA 721 AAAAATTTGT TACTCAACAA CAATATAGAG ATCACCTTTT TGATAAGGAA GCCACAGATG 781 ATGGACATAA CAACAACCTT CTTCCTCAGA TTATTCAGTG TTTTGCATGT CCAAATTGCT 841 TCCTTCTTTT TAGCAGAAAG GAGGAGTGTT CAAAGCATAT GTCTGGAAAG AATCATTTCC 901 ATCAGAGTTT CAAACTGGGT GATAACAAAG GAATTGCACA TCCAATATCT TTCCCATCTT 961 TTGCAAAGAA ACTTTTGATC TCTCTGTGCA AAGATGTTCC CTTTCAAGTT AAGTGTGTGG 1021 CCTGCCACAA GACACTGCGT TCCCACATGG AGCTCACTGC CCATTTCAGA GTTCATTGTC 1081 GAAATGCTGG ACCTGTAGCT GTAGCTGAGA AGAGCATTAC CCAGGTTGCA GAGAAATTCA 1141 TATTAAGAGG TTATTGTCCA GATTGCAATC AAGTCTTTGT GGATGAAACC AGCACCCAAA 1201 ATCATAAGCA GAATTCAGGA CACAAAGTCC GAGTCATTAA CTCAGTGGAA GAATCAGTCT 1261 TACTCTATTG CCACAGCAGC GAAGGGAACA AGGATCCTTC TTCTGACTTG CATTTATTGT 1321 TGGATCAATC AAAATTTTCA TCACTTAAAA GAACCATGTC TATTAAAGAA TCTAGCTCAC 1381 TGGAGTGCAT TGCCATTCCA AAAAAGAAGA TGAATTTAAA AGATAAAAGC CATGAAGGTG 1441 TTGCTTGTGT CCAGAAAGAA AAATCAGTAG TTAAAACCTG GTTCTGTGAA TGCAATCAGC 1501 GATTCCCAAG TGAAGATGCA GTAGAAAAGC ATGTTTTCTC AGCAAACACA ATGGGTTATA 1561 AATGTGTGGT CTGTGGAAAG GTATGTGATG ATTCAGGGGT CATTCGTTTA CACATGAGCC 1621 GGATTCACGG AGGGGCACAT TTAAATAACT TTCTTTTCTG GTGTCGGACA TGCAAAAAGG 1681 AGTTAACAAG GAAAGATACT ATCATGGCAC ATGTGACTGA ATTTCATAAT GGACACAGAT 1741 ATTTTTATGA GATGGATGAG GTAGAAGGTG AAACTTTGCC ATCATCCTCT ACAACATTGG 1801 ATAATTTGAC TGCTAACAAG CCTTCATCAG CTATTACTGT TATTGATCAT TCCCCGGCAA 1861 ATAGTTCTCC GAGGGGTAAA TGGCAATGCC GGATTTGTGA AGATATGTTT GATTCCCAGG 1921 AATATGTAAA ACAGCACTGC ATGTCTTTGG CAAGCCACAA GTTTCATAGA TACAGCTGTG 1981 CTCACTGCAG AAAGCCTTTT CATAAGATAG AAACATTGTA CCGACATTGC CAAGATGAGC 2041 ATGACAATGA GATAAAGATT AAATACTTCT GTGGGCTTTG TGATCTTATC TTTAATGTGG 2101 AAGAAGCATT TCTGAGTCAT TATGAGGAGC ACCACAGCAT AGATTATGTA TTTGTGTCAG 2161 AAAAAACTGA AACTTCAATT AAAACCGAAG ATGATTTTCC AGTAATAGAG ACCAGTAACC 2221 AGTTAACTTG TGGTTGCCGT GAGAGTTACA TCTGTAAAGT CAACAGAAAA GAAGATTATA 2281 GCAGATGTCT CCAAATCATG CTGGATAAAG GAAAACTGTG GTTTCGCTGC AGTTTATGTT 2341 CGGCAACAGC ACAGAATTTA ACCGACATGA ACACTCATAT CCATCAAGTG CACAAAGAAA 2401 AGAGTGATGA GGAGGAGCAG CAGTATGTAA TCAAGTGTGG CACCTGCACC AAAGCATTTC 2461 ATGATCCTGA GAGTGCACAG CAGCATTTCC ATAGAAAACA TTGCTTCTTA CAGAAACCCA 2521 GTGTGGCTCA TTTTGGATCT GAAAAATCAA ACCTGTACAA GTTTACTGCT AGTGCCTCAC 2581 ATACAGAGAG AAAACTGAAA CAGGCAATAA ACTATTCAAA AAGTTTAGAC ATGGAGAAAG 2641 GAGTTGAGAA TGACCTAAGC TATCAGAATA TAGAGGAAGA AATTGTTGAG CTTCCAGATT 2701 TGGATTACCT GCGAACCATG ACTCATATAG TCTTTGTAGA TTTTGATAAC TGGTCAAACT 2761 TTTTTGGTCA TCTACCAGGG CATCTAAACC AAGGAACATT TATTTGGGGC TTTCAAGGTA 2821 CGGTTAATAA GAAAAACAAA AGAAAACTTT TTCCCACCTC TTACCCAACT TTCTTGTACA 2881 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac