Construct: ORF ccsbBroadEn_11810
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017436.1_s300c1, BRDN0000394654
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CHTOP (26097)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 26097 | CHTOP | chromatin target of PRMT1 | NM_001206612.1 | 100% | 100% | |
| 2 | human | 26097 | CHTOP | chromatin target of PRMT1 | NM_015607.4 | 99.5% | 99.5% | 217_218insAGA |
| 3 | human | 26097 | CHTOP | chromatin target of PRMT1 | XM_017000993.2 | 81.5% | 81.5% | 403_404ins138 |
| 4 | human | 26097 | CHTOP | chromatin target of PRMT1 | NM_001317077.1 | 81.1% | 81.1% | 217_218insAGA;400_401ins138 |
| 5 | human | 26097 | CHTOP | chromatin target of PRMT1 | NM_001244664.1 | 30.2% | 29.3% | (many diffs) |
| 6 | mouse | 66511 | Chtop | chromatin target of PRMT1 | NM_001293776.1 | 97% | 99.1% | (many diffs) |
| 7 | mouse | 66511 | Chtop | chromatin target of PRMT1 | NM_001293777.1 | 96.6% | 98.7% | (many diffs) |
| 8 | mouse | 66511 | Chtop | chromatin target of PRMT1 | NM_001293782.1 | 87% | 89.1% | (many diffs) |
| 9 | mouse | 66511 | Chtop | chromatin target of PRMT1 | NM_023215.6 | 87% | 89.1% | (many diffs) |
| 10 | mouse | 66511 | Chtop | chromatin target of PRMT1 | NM_001293778.1 | 78.5% | 80.7% | (many diffs) |
| 11 | mouse | 66511 | Chtop | chromatin target of PRMT1 | NM_001293779.1 | 78.1% | 80.3% | (many diffs) |
| 12 | mouse | 66511 | Chtop | chromatin target of PRMT1 | NM_001293780.1 | 68.5% | 70.6% | (many diffs) |
| 13 | mouse | 66511 | Chtop | chromatin target of PRMT1 | NM_001293781.1 | 68.1% | 70.2% | (many diffs) |
| 14 | mouse | 66511 | Chtop | chromatin target of PRMT1 | XR_867226.2 | 33% | (many diffs) | |
| 15 | mouse | 66511 | Chtop | chromatin target of PRMT1 | XR_001783734.1 | 27.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 816
- ORF length:
- 747
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCTGCACAG TCAGCGCCGA AAGTTGTGCT AAAAAGCACC ACCAAGATGT 121 CTCTAAATGA GCGCTTTACT AATATGCTGA AGAACAAACA GCCGACGCCA GTGAATATTC 181 GGGCTTCGAT GCAGCAACAA CAGCAGCTAG CCAGTGCCAG AAACAGAAGA CTGGCCCAGC 241 AGATGGAGAA TAGACCCTCT GTCCAGGCAG CATTAAAACT TAAGCAGAAG AGCTTAAAGC 301 AGCGCCTGGG TAAGAGTAAC ATCCAGGCAC GGTTAGGCCG ACCCATAGGG GCCCTGGCCA 361 GGGGAGCAAT CGGAGGACGA GGCCTACCCA TAATCCAGAG AGGCTTGCCC AGAGGAGGAC 421 TACGTGGGGG ACGTGCCACC AGAACCCTAC TTAGGGGCGG GATGTCACTC CGAGGTCAAA 481 ACCTGCTCCG AGGTGGACGA GCCGTAGCTC CCCGAATGGG CTTAAGAAGA GGTGGTGTTC 541 GAGGTCGTGG AGGTCCTGGG AGAGGGGGCC TAGGGCGTGG AGCTATGGGT CGTGGCGGAA 601 TCGGTGGTAG AGGTCGGGGT ATGATAGGTC GGGGAAGAGG GGGCTTTGGA GGCCGAGGCC 661 GAGGCCGTGG ACGAGGGAGA GGTGCCCTTG CTCGCCCTGT ATTGACCAAG GAGCAGCTGG 721 ACAACCAATT GGATGCATAT ATGTCGAAAA CAAAAGGACA CCTGGATGCT GAGTTGGATG 781 CCTACATGGC GCAGACAGAT CCCGAAACCA ATGATTTGCC AACTTTCTTG TACAAAGTtg 841 gcattataag aaagcattgc ttatcaattt gttgcaacga ac