Construct: ORF ccsbBroadEn_11835

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013762.1_s300c1, BRDN0000386047
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NUFIP1 (26747)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 26747 NUFIP1 nuclear FMR1 interacting pr... NM_012345.3 55.6% 55.7% 1_657del;1434C>T
2 human 26747 NUFIP1 nuclear FMR1 interacting pr... XR_941559.2 26.9% 1_704del;1069_1198del;1282_1283ins380
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
894
ORF length:
828
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCA TGCTCCTGGC ATGAAGAAGA TCAAGTTAGA CACTCCAGAG GAAATTGCAC
121GGTGGAGGGA AGAAAGAAGG AAAAACTATC CAACTCTGGC CAATATTGAA AGGAAGAAGA
181AGTTAAAACT TGAAAAGGAG AAGAGAGGAG CAGTATTGAC AACAACACAA TATGGCAAGA
241TGAAGGGGAT GTCCAGACAT TCACAAATGG CAAAGATCAG AAGTCCTGGC AAGAATCACA
301AATGGAAAAA CGACAATTCT AGACAGAGAG CAGTCACTGG ATCAGGCAGT CACTTGTGTG
361ATTTGAAGCT AGAAGGTCCA CCGGAGGCAA ATGCAGATCC TCTTGGTGTT TTGATAAACA
421GTGATTCTGA GTCTGATAAG GAGGAGAAAC CACAACATTC TGTGATACCC AAGGAAGTGA
481CACCAGCCCT ATGCTCACTA ATGAGTAGCT ATGGCAGTCT TTCAGGGTCA GAGAGTGAGC
541CAGAAGAAAC TCCCATCAAG ACTGAAGCAG ACGTTTTGGC AGAAAACCAG GTTCTTGATA
601GCAGTGCTCC TAAGAGTCCA AGTCAAGATG TTAAAGCAAC TGTTAGAAAT TTTTCAGAAG
661CCAAGAGTGA GAACCGAAAG AAAAGCTTTG AAAAAACAAA CCCTAAGAGG AAAAAAGATT
721ATCACAACTA TCAAACGTTA TTCGAACCAA GAACACACCA TCCATATCTC TTGGAAATGC
781TTCTAGCTCC GGACATTCGA CATGAAAGAA ATGTGATTTT GCAGTGTGTT CGGTACATCA
841TTAAAAAAGA CTTTTTTGGA CTGGATACTA ATTCTGCGAA AAGTAAAGAT GTATACCCAA
901CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)