Construct: ORF ccsbBroadEn_11901
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007335.1_s300c1, BRDN0000386727
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CLEC2D (29121)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 29121 | CLEC2D | C-type lectin domain family... | NM_001197318.3 | 82.8% | 78.5% | (many diffs) |
| 2 | human | 29121 | CLEC2D | C-type lectin domain family... | NM_013269.6 | 80.2% | 80.1% | 67C>G;171C>T;463_573del |
| 3 | human | 29121 | CLEC2D | C-type lectin domain family... | NM_001004419.5 | 79% | 78.8% | 67C>G;171C>T;463_582del |
| 4 | human | 29121 | CLEC2D | C-type lectin domain family... | NM_001197317.3 | 61.2% | 61.2% | 60_61ins111;352_462del |
| 5 | human | 29121 | CLEC2D | C-type lectin domain family... | NM_001197319.3 | 59.4% | 55.1% | (many diffs) |
| 6 | human | 29121 | CLEC2D | C-type lectin domain family... | NR_036693.3 | 8.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 528
- ORF length:
- 462
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCA TGACAGTAAC AATGTGGAGA AAGACATTAC ACCATCTGAA TTGCCTGCAA 121 ACCCAGGTTG TGTGCATTCA AAAGAGCATT CTATTAAAGC TACCTTAATT TGGCGCTTAT 181 TTTTCTTAAT CATGTTTCTG ACAATCATAG TGTGTGGAAT GGTTGCTGCT TTAAGTGCAA 241 TAAGAGCTAA CTGCCATCAA GAGCCATCAG TATGTCTTCA AGCTGCATGC CCAGAAAGCT 301 GGATTGGTTT TCAAAGAAAG TGTTTCTATT TTTCTGATGA CACCAAGAAC TGGACATCAA 361 GTCAGAGGTT TTGTGACTCA CAAGATGCTG ATCTTGCTCA GGTTGAAAGC TTCCAGGAAC 421 TGAATTTCCT GTTGAGATAT AAAGGCCCAT CTGATCACTG GATTGGGCTG AGCAGAGAAC 481 AAGGCCAACC ATGGAAATGG ATAAATGGTA CTGAATGGAC AAGACAGTAC CCAACTTTCT 541 TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac