Construct: ORF ccsbBroadEn_11918
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013914.1_s300c1, BRDN0000392962
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- BAZ2B (29994)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 29994 | BAZ2B | bromodomain adjacent to zin... | XM_011511054.2 | 32.5% | 31.9% | (many diffs) |
| 2 | human | 29994 | BAZ2B | bromodomain adjacent to zin... | XM_011511053.3 | 31.5% | 30.9% | (many diffs) |
| 3 | human | 29994 | BAZ2B | bromodomain adjacent to zin... | XM_017003934.1 | 30.8% | 30.3% | (many diffs) |
| 4 | human | 29994 | BAZ2B | bromodomain adjacent to zin... | XM_017003933.1 | 30.8% | 30.3% | (many diffs) |
| 5 | human | 29994 | BAZ2B | bromodomain adjacent to zin... | XM_017003931.1 | 30% | 29.4% | (many diffs) |
| 6 | human | 29994 | BAZ2B | bromodomain adjacent to zin... | XM_011511050.1 | 29.9% | 29.4% | (many diffs) |
| 7 | human | 29994 | BAZ2B | bromodomain adjacent to zin... | XM_017003930.1 | 29.9% | 29.4% | (many diffs) |
| 8 | human | 29994 | BAZ2B | bromodomain adjacent to zin... | XM_017003928.1 | 29.9% | 29.4% | (many diffs) |
| 9 | human | 29994 | BAZ2B | bromodomain adjacent to zin... | NM_001329857.2 | 29.8% | 29.3% | (many diffs) |
| 10 | human | 29994 | BAZ2B | bromodomain adjacent to zin... | XM_017003936.1 | 29.6% | 29.1% | (many diffs) |
| 11 | human | 29994 | BAZ2B | bromodomain adjacent to zin... | NM_013450.4 | 29.6% | 29.1% | (many diffs) |
| 12 | human | 29994 | BAZ2B | bromodomain adjacent to zin... | XM_017003926.1 | 29.5% | 29% | (many diffs) |
| 13 | human | 29994 | BAZ2B | bromodomain adjacent to zin... | XM_011511045.1 | 29.5% | 28.9% | (many diffs) |
| 14 | human | 29994 | BAZ2B | bromodomain adjacent to zin... | XM_011511047.1 | 29.4% | 28.9% | (many diffs) |
| 15 | human | 29994 | BAZ2B | bromodomain adjacent to zin... | XM_011511048.2 | 29.4% | 28.9% | (many diffs) |
| 16 | human | 29994 | BAZ2B | bromodomain adjacent to zin... | XM_017003935.1 | 29.2% | 28.6% | (many diffs) |
| 17 | human | 29994 | BAZ2B | bromodomain adjacent to zin... | XM_011511042.1 | 29.1% | 28.5% | (many diffs) |
| 18 | human | 29994 | BAZ2B | bromodomain adjacent to zin... | XM_017003923.1 | 29% | 28.5% | (many diffs) |
| 19 | human | 29994 | BAZ2B | bromodomain adjacent to zin... | XR_001738733.1 | 28.9% | (many diffs) | |
| 20 | human | 29994 | BAZ2B | bromodomain adjacent to zin... | XM_011511039.1 | 28.7% | 28.2% | (many diffs) |
| 21 | human | 29994 | BAZ2B | bromodomain adjacent to zin... | XM_005246492.4 | 28.6% | 28.1% | (many diffs) |
| 22 | human | 29994 | BAZ2B | bromodomain adjacent to zin... | XM_011511038.2 | 28.6% | 28.1% | (many diffs) |
| 23 | human | 29994 | BAZ2B | bromodomain adjacent to zin... | XM_017003921.1 | 28.6% | 28.1% | (many diffs) |
| 24 | human | 29994 | BAZ2B | bromodomain adjacent to zin... | XM_017003922.1 | 28.6% | 28.1% | (many diffs) |
| 25 | human | 29994 | BAZ2B | bromodomain adjacent to zin... | XM_005246488.2 | 28.6% | 28.1% | (many diffs) |
| 26 | human | 29994 | BAZ2B | bromodomain adjacent to zin... | XM_005246489.4 | 28.6% | 28.1% | (many diffs) |
| 27 | human | 29994 | BAZ2B | bromodomain adjacent to zin... | XM_017003920.1 | 28.6% | 28.1% | (many diffs) |
| 28 | human | 29994 | BAZ2B | bromodomain adjacent to zin... | XM_024452828.1 | 28.6% | 28.1% | (many diffs) |
| 29 | human | 29994 | BAZ2B | bromodomain adjacent to zin... | XM_024452825.1 | 28.4% | 27.9% | (many diffs) |
| 30 | human | 29994 | BAZ2B | bromodomain adjacent to zin... | XM_024452826.1 | 28.4% | 27.9% | (many diffs) |
| 31 | human | 29994 | BAZ2B | bromodomain adjacent to zin... | XM_024452827.1 | 28.4% | 27.9% | (many diffs) |
| 32 | human | 29994 | BAZ2B | bromodomain adjacent to zin... | XM_011511052.1 | 28.3% | 27.8% | (many diffs) |
| 33 | human | 29994 | BAZ2B | bromodomain adjacent to zin... | NM_001289975.1 | 28% | 27.5% | (many diffs) |
| 34 | human | 29994 | BAZ2B | bromodomain adjacent to zin... | XM_011511051.1 | 27.9% | 27.4% | (many diffs) |
| 35 | human | 29994 | BAZ2B | bromodomain adjacent to zin... | NM_001329858.2 | 27.9% | 27.4% | (many diffs) |
| 36 | human | 29994 | BAZ2B | bromodomain adjacent to zin... | XM_011511044.1 | 27.5% | 26.9% | (many diffs) |
| 37 | human | 29994 | BAZ2B | bromodomain adjacent to zin... | XM_011511043.1 | 27.2% | 26.7% | (many diffs) |
| 38 | human | 29994 | BAZ2B | bromodomain adjacent to zin... | XM_017003924.1 | 27.1% | 26.6% | (many diffs) |
| 39 | human | 29994 | BAZ2B | bromodomain adjacent to zin... | XM_017003925.1 | 27.1% | 26.6% | (many diffs) |
| 40 | human | 29994 | BAZ2B | bromodomain adjacent to zin... | XM_024452829.1 | 27.1% | 26.6% | (many diffs) |
| 41 | human | 29994 | BAZ2B | bromodomain adjacent to zin... | XR_001738732.1 | 25% | (many diffs) | |
| 42 | mouse | 407823 | Baz2b | bromodomain adjacent to zin... | XM_017319106.1 | 27.4% | 27% | (many diffs) |
| 43 | mouse | 407823 | Baz2b | bromodomain adjacent to zin... | XM_017319104.1 | 25.2% | 24.9% | (many diffs) |
| 44 | mouse | 407823 | Baz2b | bromodomain adjacent to zin... | XM_017319105.1 | 25.2% | 24.9% | (many diffs) |
| 45 | mouse | 407823 | Baz2b | bromodomain adjacent to zin... | XM_017319103.1 | 25.2% | 24.9% | (many diffs) |
| 46 | mouse | 407823 | Baz2b | bromodomain adjacent to zin... | NM_001001182.3 | 24.9% | 24.6% | (many diffs) |
| 47 | mouse | 407823 | Baz2b | bromodomain adjacent to zin... | XM_017319102.1 | 24.9% | 24.6% | (many diffs) |
| 48 | mouse | 407823 | Baz2b | bromodomain adjacent to zin... | XM_017319101.1 | 24.8% | 24.5% | (many diffs) |
| 49 | mouse | 407823 | Baz2b | bromodomain adjacent to zin... | XM_017319099.1 | 24.8% | 24.5% | (many diffs) |
| 50 | mouse | 407823 | Baz2b | bromodomain adjacent to zin... | XM_017319100.1 | 24.8% | 24.5% | (many diffs) |
| 51 | mouse | 407823 | Baz2b | bromodomain adjacent to zin... | XM_017319098.1 | 24.6% | 24.3% | (many diffs) |
| 52 | mouse | 407823 | Baz2b | bromodomain adjacent to zin... | XM_017319097.1 | 24.6% | 24.3% | (many diffs) |
| 53 | mouse | 407823 | Baz2b | bromodomain adjacent to zin... | XM_017319095.1 | 24.5% | 24.2% | (many diffs) |
| 54 | mouse | 407823 | Baz2b | bromodomain adjacent to zin... | XM_017319096.1 | 24.5% | 24.2% | (many diffs) |
| 55 | mouse | 407823 | Baz2b | bromodomain adjacent to zin... | XM_017319094.1 | 24.5% | 24.2% | (many diffs) |
| 56 | mouse | 407823 | Baz2b | bromodomain adjacent to zin... | XM_017319093.1 | 24.5% | 24.2% | (many diffs) |
| 57 | mouse | 407823 | Baz2b | bromodomain adjacent to zin... | XM_017319092.1 | 24.4% | 24.1% | (many diffs) |
| 58 | mouse | 407823 | Baz2b | bromodomain adjacent to zin... | XM_017319091.1 | 24.4% | 24% | (many diffs) |
| 59 | mouse | 407823 | Baz2b | bromodomain adjacent to zin... | XM_017319090.1 | 24.2% | 23.9% | (many diffs) |
| 60 | mouse | 407823 | Baz2b | bromodomain adjacent to zin... | XM_017319088.1 | 24.1% | 23.8% | (many diffs) |
| 61 | mouse | 407823 | Baz2b | bromodomain adjacent to zin... | XM_017319089.1 | 24.1% | 23.8% | (many diffs) |
| 62 | mouse | 407823 | Baz2b | bromodomain adjacent to zin... | XM_011239661.2 | 24.1% | 23.8% | (many diffs) |
| 63 | mouse | 407823 | Baz2b | bromodomain adjacent to zin... | XM_011239663.2 | 24.1% | 23.8% | (many diffs) |
| 64 | mouse | 407823 | Baz2b | bromodomain adjacent to zin... | XM_011239665.1 | 24.1% | 23.8% | (many diffs) |
| 65 | mouse | 407823 | Baz2b | bromodomain adjacent to zin... | XM_011239669.2 | 24.1% | 23.8% | (many diffs) |
| 66 | mouse | 407823 | Baz2b | bromodomain adjacent to zin... | XM_011239670.2 | 24.1% | 23.8% | (many diffs) |
| 67 | mouse | 407823 | Baz2b | bromodomain adjacent to zin... | XM_011239672.1 | 24.1% | 23.8% | (many diffs) |
| 68 | mouse | 407823 | Baz2b | bromodomain adjacent to zin... | XM_017319083.1 | 24.1% | 23.8% | (many diffs) |
| 69 | mouse | 407823 | Baz2b | bromodomain adjacent to zin... | XM_017319084.1 | 24.1% | 23.8% | (many diffs) |
| 70 | mouse | 407823 | Baz2b | bromodomain adjacent to zin... | XM_017319085.1 | 24.1% | 23.8% | (many diffs) |
| 71 | mouse | 407823 | Baz2b | bromodomain adjacent to zin... | XM_017319086.1 | 24.1% | 23.8% | (many diffs) |
| 72 | mouse | 407823 | Baz2b | bromodomain adjacent to zin... | XM_017319087.1 | 24.1% | 23.8% | (many diffs) |
| 73 | mouse | 407823 | Baz2b | bromodomain adjacent to zin... | XR_001783145.1 | 19.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1995
- ORF length:
- 1929
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG ACAAACTAAA AGTACAAGCT CAGGTGGAGG AAATCGAAAA TGTAATCAGG 121 AACAAAGCAA AAACCAGCCT TTGGATGCTA GAGTTGACAA AATCAAAGAT AAGAAACCAA 181 GGAAGAAAGC AATGGAAAGT TCTAGCAACA GTGATAGTGA TTCAGGCACA TCATCAGACA 241 CCTCAAGTGA AGGCATTAGT AGCAGTGATT CAGATGATCT AGAAGAAGAT GAAGAAGAAG 301 AAGATCAAAG TATTGAAGAA AGTGAAGATG ATGATTCTGA TTCAGAGAGT GAAGCACAAC 361 ATAAAAGTAA CAACCAGGTG CTATTACATG GTATTTCAGA CCCAAAAGCA GATGGACAGA 421 AAGCAACTGA AAAAGCCCAG GAAAAAAGAA TACACCAGCC ATTACCTCTT GCGTCTGAAT 481 CCCAGACTCA CTCATTCCAA TCCCAGCAGA AGCAGCCTCA GGTTTTGTCA CAGCAGCTTC 541 CATTTATTTT CCAAAGCTCT CAGGCAAAGG AGGAATCTGT GAACAAACAC ACCAGTGTAA 601 TACAGTCTAC GGGATTGGTG TCCAATGTGA AACCTTTATC TTTGGTAAAT CAAGCCAAAA 661 AGGAAACTTA CATGAAACTC ATAGTTCCTT CTCCTGATGT TCTTAAAGCA GGGAATAAAA 721 ATACCTCTGA AGAATCTAGT TCATTGACCA GTGAATTGAG ATCCAAACGG GAACAATATA 781 AACAGGCATT CCCATCACAG TTAAAGAAAC AAGAGTCATC GAAGAGCCTG AAGAAGGTTA 841 TTGCAGCTTT GTCAAATCCA AAAGCAACCT CTAGTTCACC AGCACATCCA AAACAAACAT 901 TAGAAAACAA CCACCCAAAT CCATTCTTGA CAAATGCACT TTTAGGTAAT CACCAACCAA 961 ATGGAGTTAT TCAAAGTGTC ATTCAAGAAG CTCCTCTAGC ACTTACTACC AAAACTAAAA 1021 TGCAGAGCAA GATTAATGAA AACATTGCTG CTGCAAGTAG CACCCCTTTT TCCTCACCTG 1081 TAAATCTGAG TACAAGTGGG AGAAGAACCC CTGGCAATCA GACACCTGTA ATGCCCTCTG 1141 CCTCTCCCAT CCTGCATAGT CAAGGGAAGG AAAAAGCAGT TAGCAATAAT GTAAACCCAG 1201 TAAAAACACA GCATCACTCC CATCCTGCAA AATCTTTAGT GGAACAATTC AGAGGAACAG 1261 ATTCAGACAT TCCCAGTAGT AAAGATTCTG AAGATTCAAA TGAGGATGAA GAGGAAGATG 1321 ATGAAGAAGA AGATGAGGAA GATGATGAAG ATGATGAATC TGATGACAGC CAATCAGGCA 1381 CTTCCAAAAG AAGAAGAGTA ACAGATGAAC GTGAACTGCG TATTCCATTG GAATATGGCT 1441 GGCAGAGAGA GACAAGAATA AGAAACTTTG GAGGGCGCCT TCAAGGAGAA GTAGCATATT 1501 ATGCTCCATG TGGAAAGAAA CTTAGGCAGT ACCCTGAAGT AATAAAGTAT CTCAGCAGAA 1561 ATGGAATAAT GGATATCTCA AGGGACAATT TCAGCTTCAG TGCAAAAATA AGAGTGGGTG 1621 ACTTCTATGA AGCCAGAGAT GGACCGCAGG GAATGCAGTG GTGTCTTTTG AAAGAAGAGG 1681 ATGTCATTCC TCGTATCAGG GCAATGGAAG GTCGTAGAGG AAGACCACCA AATCCAGATA 1741 GACAACGAGC AAGAGAGGAA TCCAGGATGA GACGTCGGAA AGGTCGACCT CCAAATGTTG 1801 GCAATGCTGA ATTCCTAGAT AACGCAGATG CAAAGTTGCT AAGAAAACTG CAAGCTCAAG 1861 AAATAGCCAG GCAAGCAGCA CAAATAAAGC TTTTGAGAAA ACTTCAAAAG CAGGAACAGG 1921 CTCGGGTTGC TAAAAAAGCC AAAAAACAAC AAGCAATAAT GCTGCTGAGG AGAAGCGGAA 1981 GCAAAAAGAA CAGATACCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 2041 tatcaatttg ttgcaacgaa c