Transcript: Mouse XM_017319091.1

PREDICTED: Mus musculus bromodomain adjacent to zinc finger domain, 2B (Baz2b), transcript variant X15, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Baz2b (407823)
Length:
8306
CDS:
493..7020

Additional Resources:

NCBI RefSeq record:
XM_017319091.1
NBCI Gene record:
Baz2b (407823)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017319091.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000190784 GCGATCCAAACGGGAACAATA pLKO.1 1821 CDS 100% 13.200 18.480 N Baz2b n/a
2 TRCN0000191572 GCATCACTTGTGTAGTTAAAT pLKO.1 7727 3UTR 100% 15.000 10.500 N Baz2b n/a
3 TRCN0000346850 GCATCACTTGTGTAGTTAAAT pLKO_005 7727 3UTR 100% 15.000 10.500 N Baz2b n/a
4 TRCN0000370683 GGTGCTATTACATGGTATTTC pLKO_005 1437 CDS 100% 13.200 9.240 N BAZ2B n/a
5 TRCN0000200866 GTGCAGTTCTTACGAAACTTT pLKO.1 3688 CDS 100% 5.625 3.938 N Baz2b n/a
6 TRCN0000346848 GTGCAGTTCTTACGAAACTTT pLKO_005 3688 CDS 100% 5.625 3.938 N Baz2b n/a
7 TRCN0000201016 CCAGGTGCTATTACATGGTAT pLKO.1 1434 CDS 100% 4.950 3.465 N Baz2b n/a
8 TRCN0000346847 CCAGGTGCTATTACATGGTAT pLKO_005 1434 CDS 100% 4.950 3.465 N Baz2b n/a
9 TRCN0000192271 CCTGTGAACTTGAAACTCGTA pLKO.1 6775 CDS 100% 2.640 1.848 N Baz2b n/a
10 TRCN0000346849 CCTGTGAACTTGAAACTCGTA pLKO_005 6775 CDS 100% 2.640 1.848 N Baz2b n/a
11 TRCN0000370684 AGAGCCTGAAGAAGGTTATTG pLKO_005 1886 CDS 100% 13.200 7.920 N BAZ2B n/a
12 TRCN0000144934 GAAGAGGATGATGAAGATGAT pLKO.1 2401 CDS 100% 4.950 2.475 Y ANAPC15 n/a
13 TRCN0000344368 GAAGAGGATGATGAAGATGAT pLKO_005 2401 CDS 100% 4.950 2.475 Y ANAPC15 n/a
14 TRCN0000166364 CACACACACACACACACACAA pLKO.1 7177 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017319091.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11918 pDONR223 100% 24.4% 24% None (many diffs) n/a
2 ccsbBroad304_11918 pLX_304 0% 24.4% 24% V5 (many diffs) n/a
3 TRCN0000475683 CTGCGACAGGTTACAGGCAGTTAC pLX_317 14% 24.4% 24% V5 (many diffs) n/a
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