Construct: ORF ccsbBroadEn_11919
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004565.1_s300c1, BRDN0000456500
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF354C (30832)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 30832 | ZNF354C | zinc finger protein 354C | NM_014594.3 | 87.4% | 85.1% | 748G>A;1416_1417delGT;1458_1662del |
| 2 | human | 30832 | ZNF354C | zinc finger protein 354C | XM_017009409.1 | 87.4% | 85.1% | 748G>A;1416_1417delGT;1458_1662del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1524
- ORF length:
- 1455
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCTGTGGAT CTGCTGTCTG CTCAGGAGCC TGTGACATTC AGGGATGTGG 121 CCGTGTTCTT CAGCCAGGAC GAGTGGTTGC ACCTGGACTC TGCCCAGAGG GCCTTGTACC 181 GGGAGGTGAT GCTGGAGAAC TACAGCAGCC TGGTCTCACT GGGGATTCCA TTTTCAATGC 241 CAAAGTTGAT TCATCAGTTG CAGCAAGGAG AAGATCCCTG CATGGTGGAA AGAGAAGTCC 301 CTTCAGATAC CCGTCTAGGT TTCAAGACTT GGCTTGAAAC AGAAGCATTG CCTCATAGAC 361 AGGACATTTT TATAGAAGAA ACATCTCAGG GAATGGTAAA GAAAGAATCC ATTAAGGATG 421 GTCACTGGGA CATTAACTTT GAAGAAGCTG TGGAATTTGA GAGCGAGATA GAAGAAGAGC 481 AAGAGAAGAA ACCTCTTAGA CAAATGATAG ATTCGCATGA GAAAACCATC AGTGAAGATG 541 GAAACCATAC AAGTCTTGAA TTGGGGAAAA GCTTATTTAC AAATACAGCT CTTGTCACAC 601 AACAGAGTGT TCCTATAGAA AGGATACCCA ATATGTATTA TACATTTGGG AAAGATTTTA 661 AACAGAATTT TGATCTCATG AAATGCTTCC AGATTTACCC AGGAGGAAAA CCTCACATCT 721 GTAATGAATG TGGGAAGAGC TTCAAGCAGA ATCTGCATCT TATTGAACAT CAGAGAATTC 781 ATACAGGTGA GAAACCCTAC AAATGTAATG AGTGTAAAAA AACCTTCAGC CACAGATCAT 841 CCCTTCTTTC TCATCAGAGA ATTCATACTG GAGAGAAACC TTACAAGTGT AATGAATGTG 901 AGAAGGCATT TAGCAACAGT TCAACCCTTA TCAAACATCT GAGAGTGCAT ACTGGAGAGA 961 AACCGTATCG ATGTAGGGAA TGTGGTAAAG CCTTTAGCCA GTGTTCAACC CTCACTGTAC 1021 ATCAGAGAAT TCATACTGGA GAGAAACTCT ATAAATGCGG CGAATGTGAG AAGGCCTTCA 1081 ACTGTAGAGC AAAACTTCAC AGGCATCAAA GAATCCATAC AGGTGAGAAA CCCTATAAAT 1141 GTAGTGAGTG TGGGAAGGGA TACAGCCAGT TTACATCTCT AGCTGAACAT CAGAGGTTTC 1201 ATACTGGAGA ACAACTGTAT ACATGCTTGG AATGTGGGAG AACCTTCACA CGTATTGTAA 1261 CCCTTATCGA ACATCAGCGA ATTCACACTG GACAAAAACC TTATCAGTGC AACGAATGTG 1321 AGAAAGCCTT CAACCAGTAT TCATCCTTTA ATGAACATCG GAAAATTCAT ACTGGGGAAA 1381 AACTTTATAC ATGTGAGGAA TGTGGGAAAG CCTTTGGTTG CAAATCTAAC CTTTATAGGC 1441 ATCAGAGAAT TCATACTGGA GAGAAACCGT ATCAGTGTAA TCAGTGGAAA GGCCTTCAGC 1501 CAGTATTCAT TTTTAACCGA ACATTGCCAA CTTTCTTGTA CAAAGTTGGc attataagaa 1561 agcattgctt atcaatttgt tgcaacgaac