Construct: ORF ccsbBroadEn_11948
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008441.1_s300c1, BRDN0000388548
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TRNT1 (51095)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51095 | TRNT1 | tRNA nucleotidyl transferase 1 | NR_159942.2 | 17.4% | 1_78del;146C>T;250_975del | |
| 2 | human | 51095 | TRNT1 | tRNA nucleotidyl transferase 1 | NR_159944.2 | 13.3% | 1_377del;445C>T;549_1274del | |
| 3 | human | 51095 | TRNT1 | tRNA nucleotidyl transferase 1 | NM_001302946.2 | 12.8% | 12% | (many diffs) |
| 4 | human | 51095 | TRNT1 | tRNA nucleotidyl transferase 1 | NM_001367321.1 | 12.2% | 11.4% | (many diffs) |
| 5 | human | 51095 | TRNT1 | tRNA nucleotidyl transferase 1 | NM_001367322.1 | 12.2% | 11.4% | (many diffs) |
| 6 | human | 51095 | TRNT1 | tRNA nucleotidyl transferase 1 | NM_001367323.1 | 12.2% | 11.4% | (many diffs) |
| 7 | human | 51095 | TRNT1 | tRNA nucleotidyl transferase 1 | NM_182916.3 | 12.2% | 11.4% | (many diffs) |
| 8 | human | 51095 | TRNT1 | tRNA nucleotidyl transferase 1 | NR_159943.2 | 8.4% | 1_1106del;1174C>T;1278_2003del | |
| 9 | human | 51095 | TRNT1 | tRNA nucleotidyl transferase 1 | NR_159938.1 | 7.7% | (many diffs) | |
| 10 | human | 51095 | TRNT1 | tRNA nucleotidyl transferase 1 | NR_159939.1 | 7.5% | (many diffs) | |
| 11 | human | 51095 | TRNT1 | tRNA nucleotidyl transferase 1 | NR_159940.1 | 7.5% | (many diffs) | |
| 12 | human | 51095 | TRNT1 | tRNA nucleotidyl transferase 1 | XR_001740168.2 | 6.2% | (many diffs) | |
| 13 | human | 51095 | TRNT1 | tRNA nucleotidyl transferase 1 | NR_159935.1 | 6.1% | (many diffs) | |
| 14 | human | 51095 | TRNT1 | tRNA nucleotidyl transferase 1 | NR_159941.1 | 4.8% | (many diffs) | |
| 15 | human | 51095 | TRNT1 | tRNA nucleotidyl transferase 1 | XR_001740169.2 | 4.5% | (many diffs) | |
| 16 | human | 51095 | TRNT1 | tRNA nucleotidyl transferase 1 | NR_159936.1 | 3.7% | (many diffs) | |
| 17 | human | 51095 | TRNT1 | tRNA nucleotidyl transferase 1 | NR_159934.1 | 3.5% | (many diffs) | |
| 18 | human | 51095 | TRNT1 | tRNA nucleotidyl transferase 1 | NR_159937.1 | 2.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 237
- ORF length:
- 171
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCT GAGGTGCCTG TATCATTGGC ACAGGCCAGT GCTGAACCGT AGGTGGAGTA 121 GGCTGTGCCT TCTGAAGCAG TATCTATTCA CAATGAAGTT GCAGTCTCCC GAATTCCAGT 181 CACTTTTCAC AGAAGGACTG AAGAGTCTGA CAGGTATAAA TGCTTTCCAT GAGAACTGCC 241 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 301 aac