Construct: ORF ccsbBroadEn_11950

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006005.1_s300c1, BRDN0000397154
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PHF20L1 (51105)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51105 PHF20L1 PHD finger protein 20 like 1 XM_017013513.1 36.1% 36.1% 1_1707del;2371_2373delAAG
2 human 51105 PHF20L1 PHD finger protein 20 like 1 XM_017013514.2 36.1% 36.1% 1_1707del;2371_2373delAAG
3 human 51105 PHF20L1 PHD finger protein 20 like 1 NM_001277196.2 32.5% 32.5% 1_2004del
4 human 51105 PHF20L1 PHD finger protein 20 like 1 NM_001362971.1 32.5% 32.5% 1_2004del
5 human 51105 PHF20L1 PHD finger protein 20 like 1 XM_011517081.1 32.5% 32.5% 1_2004del;2668_2670delAAG
6 human 51105 PHF20L1 PHD finger protein 20 like 1 XM_017013511.1 32.5% 32.5% 1_2004del;2668_2670delAAG
7 human 51105 PHF20L1 PHD finger protein 20 like 1 XM_011517080.1 32.5% 32.5% 1_2007del;2671_2673delAAG
8 human 51105 PHF20L1 PHD finger protein 20 like 1 XM_017013510.1 32.5% 32.5% 1_2007del;2671_2673delAAG
9 human 51105 PHF20L1 PHD finger protein 20 like 1 NM_016018.5 31.7% 31.7% 1_2082del
10 human 51105 PHF20L1 PHD finger protein 20 like 1 XM_011517079.1 31.7% 31.7% 1_2082del;2746_2748delAAG
11 human 51105 PHF20L1 PHD finger protein 20 like 1 XM_017013509.1 31.7% 31.7% 1_2082del;2746_2748delAAG
12 human 51105 PHF20L1 PHD finger protein 20 like 1 XM_011517078.1 31.6% 31.6% 1_2085del;2749_2751delAAG
13 human 51105 PHF20L1 PHD finger protein 20 like 1 XM_005250931.1 31.6% 31.6% 1_2097del
14 human 51105 PHF20L1 PHD finger protein 20 like 1 XM_011517077.1 31.6% 31.6% 1_2094del;2758_2760delAAG
15 human 51105 PHF20L1 PHD finger protein 20 like 1 XM_011517075.1 31.5% 31.5% 1_2097del;2761_2763delAAG
16 human 51105 PHF20L1 PHD finger protein 20 like 1 XM_011517076.1 31.5% 31.5% 1_2097del;2761_2763delAAG
17 human 51105 PHF20L1 PHD finger protein 20 like 1 XR_001745536.1 15.2% 1_2500del;3470_6356del
18 human 51105 PHF20L1 PHD finger protein 20 like 1 XR_001745535.1 15.2% 1_2515del;3485_6371del
19 human 51105 PHF20L1 PHD finger protein 20 like 1 NR_156424.2 12.5% 1_2298del;2407_2408ins196;3072_5958del
20 human 51105 PHF20L1 PHD finger protein 20 like 1 XR_001745533.1 12.3% 1_2392del;2501_2502ins196;3166_6052del
21 mouse 239510 Phf20l1 PHD finger protein 20-like 1 XM_006520921.3 27.8% 27.6% (many diffs)
22 mouse 239510 Phf20l1 PHD finger protein 20-like 1 XM_017316601.1 27.8% 27.6% (many diffs)
23 mouse 239510 Phf20l1 PHD finger protein 20-like 1 XM_006520920.3 27.8% 27.5% (many diffs)
24 mouse 239510 Phf20l1 PHD finger protein 20-like 1 NM_001081409.1 27.1% 26.9% (many diffs)
25 mouse 239510 Phf20l1 PHD finger protein 20-like 1 XM_006520919.3 27% 26.8% (many diffs)
26 mouse 239510 Phf20l1 PHD finger protein 20-like 1 XM_006520918.3 27% 26.8% (many diffs)
27 mouse 239510 Phf20l1 PHD finger protein 20-like 1 XM_006520916.3 26.9% 26.7% (many diffs)
28 mouse 239510 Phf20l1 PHD finger protein 20-like 1 XM_006520917.3 26.9% 26.7% (many diffs)
29 mouse 239510 Phf20l1 PHD finger protein 20-like 1 XR_001781524.1 9.6% (many diffs)
30 mouse 239510 Phf20l1 PHD finger protein 20-like 1 XR_001781525.1 9.5% (many diffs)
31 mouse 239510 Phf20l1 PHD finger protein 20-like 1 XR_001781528.1 9.5% (many diffs)
32 mouse 239510 Phf20l1 PHD finger protein 20-like 1 XR_001781531.1 9.4% (many diffs)
33 mouse 239510 Phf20l1 PHD finger protein 20-like 1 XR_001781529.1 9.3% (many diffs)
34 mouse 239510 Phf20l1 PHD finger protein 20-like 1 XR_001781530.1 9.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1035
ORF length:
969
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAT CCAGTGTGAA GAGTGCTTGT GTTGGCAACA CAGCGTGTGC ATGGGGCTGC
121TGGAGGAGAG CATTCCAGAG CAGTACATCT GCTATATCTG CCGGGACCCA CCAGGTCAGA
181GGTGGAGTGC AAAATATCGT TATGATAAGG AGTGGTTGAA TAATGGGAGA ATGTGCGGGT
241TATCATTTTT CAAAGAAAAT TATTCTCATC TCAATGCCAA AAAGATAGTT TCTACACATC
301ACCTGCTTGC TGATGTCTAT GGTGTTACAG AAGTGCTACA CGGGCTACAG CTGAAGATTG
361GAATACTAAA GAATAAACAT CATCCTGACC TTCATCTCTG GGCTTGTTCC GGGAAGCGAA
421AAGACCAAGA TCAAATAATA GCTGGGGTGG AGAAAAAAAT AGCTCAAGAC ACAGTTAATC
481GAGAAGAAAA GAAATATGTA CAGAACCATA AAGAACCACC TCGTTTGCCC CTAAAAATGG
541AAGGAACTTA TATAACAAGT GAGCATAGCT ATCAAAAGCC ACAAAGTTTT GGTCAGGACT
601GTAAATCTCT CGCAGACCCT GGGAGCTCAG ATGATGATGA TGTTAGTAGT TTGGAAGAAG
661AACAAGAATT CCACATGAGA AGTAAAAACA GTTTACAGTA CTCAGCAAAA GAACATGGAA
721TGCCTGAAAA GAATCCAGCT GAAGGGAATA CAGTATTTGT TTATAATGAT AAAAAGGGCA
781CCGAAGACCC AGGAGACTCA CATCTTCAGT GGCAGCTCAA TCTCCTTACA CACATAGAAA
841ATGTGCAGAA CGAAGTTACC AGCAGGATGG ACCTAATAGA AAAAGAAGTC GATGTTCTGG
901AAAGCTGGCT TGATTTCACA GGGGAGTTGG AGCCACCAGA TCCTCTTGCA AGATTGCCCC
961AACTTAAACG CCACATAAAA CAGCTCCTAA TTGACATGGG CAAAGTACAG CAGATAGCAA
1021CTCTTTGCTC TGTATGCCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct
1081tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)