Construct: ORF ccsbBroadEn_11969
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013604.1_s300c1, BRDN0000391192
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TFDP3 (51270)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51270 | TFDP3 | transcription factor Dp fam... | NM_016521.3 | 85.1% | 85.1% | 1_180del |
| 2 | human | 7027 | TFDP1 | transcription factor Dp-1 | XM_017020720.2 | 78.1% | 68.7% | (many diffs) |
| 3 | human | 7027 | TFDP1 | transcription factor Dp-1 | XM_017020721.1 | 78.1% | 68.7% | (many diffs) |
| 4 | human | 7027 | TFDP1 | transcription factor Dp-1 | XM_024449405.1 | 77.2% | 68.2% | (many diffs) |
| 5 | human | 7027 | TFDP1 | transcription factor Dp-1 | NM_007111.5 | 72.4% | 64.4% | (many diffs) |
| 6 | human | 7027 | TFDP1 | transcription factor Dp-1 | XM_005268327.1 | 72.4% | 64.4% | (many diffs) |
| 7 | human | 7027 | TFDP1 | transcription factor Dp-1 | XM_005268328.2 | 71.7% | 63.9% | (many diffs) |
| 8 | human | 7027 | TFDP1 | transcription factor Dp-1 | XM_017020718.1 | 71.7% | 63.9% | (many diffs) |
| 9 | human | 7027 | TFDP1 | transcription factor Dp-1 | XM_011537519.1 | 65.7% | 57.7% | (many diffs) |
| 10 | human | 7027 | TFDP1 | transcription factor Dp-1 | XM_011537520.2 | 65.7% | 57.7% | (many diffs) |
| 11 | human | 7027 | TFDP1 | transcription factor Dp-1 | XM_024449404.1 | 65.7% | 57.7% | (many diffs) |
| 12 | human | 7027 | TFDP1 | transcription factor Dp-1 | XM_017020717.1 | 62.5% | 55.5% | (many diffs) |
| 13 | human | 7027 | TFDP1 | transcription factor Dp-1 | XM_017020722.2 | 61% | 52.1% | (many diffs) |
| 14 | human | 7027 | TFDP1 | transcription factor Dp-1 | XM_017020719.2 | 58% | 50.4% | (many diffs) |
| 15 | human | 7027 | TFDP1 | transcription factor Dp-1 | NR_026580.1 | 35.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1104
- ORF length:
- 1035
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCCTCAGAGA CCAGCAGCAT CAAACATCCC TGTGGTAGGA AGCCCAAACC 121 CACCCAGCAC TCACTTTGCC TCTCAGAACC AGCATTCCTA CTCCTCACCT CCTTGGGCCG 181 GGCAGCACAA CAGGAAAGGA GAGAAGAATG GCATGGGCCT GTGCCGTCTT TCCATGAAGG 241 TCTGGGAGAC GGTGCAGAGG AAAGGGACCA CTTCCTGCCA GGAAGTGGTG GGCGAGCTGG 301 TCGCCAAGTT CAGAGCTGCC AGCAACCACG CCTCACCAAA CGAGTCAGCT TATGACGTGA 361 AAAACATAAA ACGGCGCACC TACGATGCCT TAAACGTGCT GATGGCCATG AATATCATCT 421 CCAGGGAGAA AAAGAAGATC AAGTGGATTG GTCTGACCAC CAACTCGGCT CAGAACTGTC 481 AGAACTTACG GGTGGAAAGA CAGAAGAGAC TTGAAAGAAT AAAGCAGAAA CAGTCTGAAC 541 TTCAACAACT TATTCTACAG CAAATTGCTT TCAAGAACCT GGTGCTGAGA AACCAGTATG 601 TGGAGGAGCA GGTCAGCCAG CGGCCGCTGC CCAACTCAGT CATCCACGTG CCCTTCATCA 661 TCATCAGCAG TAGCAAGAAG ACCGTCATCA ACTGCAGCAT CTCCGACGAC AAATCAGAAT 721 ATCTGTTTAA GTTTAACAGC TCCTTTGAAA TCCACGATGA CACAGAAGTG CTGATGTGGA 781 TGGGCATGAC TTTTGGGCTA GAGTCCGGGA GCTGCTCTGC CGAAGACCTT AAAATGGCCA 841 GAAATTTGGT CCCAAAGGCT CTGGAGCCGT ACGTGACAGA AATGGCTCAG GGAACTTTTG 901 GAGGTGTGTT CACGACGGCA GGTTCCAGGT CTAATGGCAC GTGGCTTTCT GCCAGTGACC 961 TGACCAACAT TGCGATTGGG ATGCTGGCCA CAAGCTCCGG TGGATCTCAG TACAGTGGCT 1021 CCAGGGTGGA GACCCCAGCA GTCGAGGAGG AAGAGGAGGA GGACAACAAC GATGACGACC 1081 TCAGTGAGAA TGACGAGGAT GACTTGCCAA CTTTCTTGTA CAAAGTtggc attataagaa 1141 agcattgctt atcaatttgt tgcaacgaac