Construct: ORF ccsbBroadEn_11970
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013340.1_s300c1, BRDN0000397339
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ERGIC2 (51290)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51290 | ERGIC2 | ERGIC and golgi 2 | NM_016570.3 | 56.8% | 51.9% | (many diffs) |
| 2 | human | 51290 | ERGIC2 | ERGIC and golgi 2 | XM_024449009.1 | 56.8% | 51.9% | (many diffs) |
| 3 | human | 51290 | ERGIC2 | ERGIC and golgi 2 | XR_001748740.2 | 13.9% | (many diffs) | |
| 4 | human | 51290 | ERGIC2 | ERGIC and golgi 2 | XR_001748741.2 | 12.8% | (many diffs) | |
| 5 | mouse | 67456 | Ergic2 | ERGIC and golgi 2 | XM_017321718.1 | 87.6% | 88.5% | (many diffs) |
| 6 | mouse | 67456 | Ergic2 | ERGIC and golgi 2 | XM_011241623.2 | 66.3% | 63.3% | (many diffs) |
| 7 | mouse | 67456 | Ergic2 | ERGIC and golgi 2 | XM_017321717.1 | 64.1% | 61.2% | (many diffs) |
| 8 | mouse | 67456 | Ergic2 | ERGIC and golgi 2 | XM_006507089.3 | 52.7% | 50.4% | (many diffs) |
| 9 | mouse | 67456 | Ergic2 | ERGIC and golgi 2 | NM_026168.4 | 51.3% | 49% | (many diffs) |
| 10 | mouse | 67456 | Ergic2 | ERGIC and golgi 2 | XM_006507087.2 | 51.3% | 49% | (many diffs) |
| 11 | mouse | 67456 | Ergic2 | ERGIC and golgi 2 | XM_017321716.1 | 51.3% | 49% | (many diffs) |
| 12 | mouse | 67456 | Ergic2 | ERGIC and golgi 2 | XR_001785162.1 | 37.8% | (many diffs) | |
| 13 | mouse | 67456 | Ergic2 | ERGIC and golgi 2 | NM_001286560.1 | 31.3% | 27.5% | (many diffs) |
| 14 | mouse | 67456 | Ergic2 | ERGIC and golgi 2 | XR_378169.3 | 18.1% | (many diffs) | |
| 15 | mouse | 67456 | Ergic2 | ERGIC and golgi 2 | XR_001785161.1 | 17.4% | (many diffs) | |
| 16 | mouse | 67456 | Ergic2 | ERGIC and golgi 2 | XR_378170.3 | 13.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 711
- ORF length:
- 645
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG GCGACTGAAT CGGAAAAAAA CTTTAAGTTT GGTAAAAGAG TTGGATGCCT 121 TTCCGAAGGT TCCTGAGAGC TATGTAGAGA CTTCAGCCAG TGGAGGTACA GTTTCTCTAA 181 TAGCATTTAC AACTATGGCT TTATTAACCA TAATGGAATT CTCAGTATAT CAAGATACAT 241 GGATGAAGTA TGAATACGAA GTAGACAAGG ATTTTTCTAG CAAATTAAGA ATTAATATAG 301 ATATTACCGT TGCCATGAAG TGTCAATATG TTGGAGCGGA TGTATTGGAT TTAGCAGAAA 361 CAATGTTTGC ATCTGCAGAT GGTTTAGTTT ATGAACCAAC AGTATTTGAT CTTTCACCAC 421 AGCAGAAAGA GTGGCAGAGG ATGCTGCAGC TGATTCAGAG TAGGCTACAA GAAGAGCATT 481 CACTTCAAGA TGTGATATTT AAAAGTGCTT TTAAAAGTAC ATCAACAGCT CTTCCACCAA 541 GAGAAGATGA TTCATCACAG TCTCCAAATG CATGCAGAAT TCATGGCCAT CTATATGTCA 601 ATAAAGTAGC AGGGAATTTT CACATAACAG TGGGGCAATT CCACATCCTC GTGGTCATGC 661 ACATTTGGCA GCACTTGTCA ACCATGAATC TTACAATTTT TCTCATAGAA TACCCAACTT 721 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac