Construct: ORF ccsbBroadEn_12003
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002062.1_s300c1, BRDN0000394118
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TMBIM4 (51643)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51643 | TMBIM4 | transmembrane BAX inhibitor... | NM_001282609.1 | 28.3% | 22.2% | 97_134del;177_486del |
| 2 | human | 51643 | TMBIM4 | transmembrane BAX inhibitor... | NM_016056.3 | 19.3% | 15.1% | 97_134del;177_714del |
| 3 | human | 51643 | TMBIM4 | transmembrane BAX inhibitor... | NM_001282606.1 | 16.1% | 11.5% | 97_275del;318_855del |
| 4 | human | 51643 | TMBIM4 | transmembrane BAX inhibitor... | NM_001282610.1 | 12.2% | 4.1% | 0_1ins55;84_621del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 204
- ORF length:
- 138
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC TGACCCCGAC CCCCGGTACC CTCGCTCCTC GATCGAGGAC GACTTCAACT 121 ATGGCAGCAG CGTGGCCTCC GCCACCGTGC ACATCCGAAT GGGTTCTCTT AACTACAGTG 181 ACTTCAACAG TTTTTTTATA CTTTGCCCAA CTTTCTTGTA CAAAGTtggc attataagaa 241 agcattgctt atcaatttgt tgcaacgaac