Construct: ORF ccsbBroadEn_12010
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009470.1_s300c1, BRDN0000391950
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF44 (51710)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51710 | ZNF44 | zinc finger protein 44 | NM_001164276.2 | 20.8% | 17.2% | (many diffs) |
| 2 | human | 51710 | ZNF44 | zinc finger protein 44 | XM_011528062.3 | 19.3% | 15.8% | (many diffs) |
| 3 | human | 51710 | ZNF44 | zinc finger protein 44 | NM_016264.4 | 13.6% | 10% | (many diffs) |
| 4 | human | 51710 | ZNF44 | zinc finger protein 44 | XR_002958321.1 | 4.3% | (many diffs) | |
| 5 | human | 51710 | ZNF44 | zinc finger protein 44 | XR_001753701.1 | 4.2% | (many diffs) | |
| 6 | human | 51710 | ZNF44 | zinc finger protein 44 | XR_001753702.1 | 3.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 528
- ORF length:
- 462
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC CCTGTGTTAT GGAACTTTCT GGGGCTACCC TAAGATGCTG GAAGCTGCCA 121 ATCTCATGGA GGGCCTAGTG GATATCGGCC CTTGGGTCAC TCTTCCCAGA GGACAGCCTG 181 AGGTGTTGGA GTGGGGCCTC CCAAAGGATC AGGACTCAGT GGCCTTTGAG GATGTGGCTG 241 TGAACTTCAC CCATGAGGAG TGGGCTTTGC TGGGTCCATC ACAGAAGAAT CTCTACAGAG 301 ATGTGATGCG AGAAACCATT AGGAACCTGA ACTGTATAGG AATGAAATGG GAAAACCAGA 361 ACATTGATGA TCAGCACCAA AATCTCAGGA GAAATCCAAG GTTATCGGAG ACATGGTTAC 421 AGAATTTCAT TTTGATCCAT TATGGTCACC TGGTAGCTTT GTCTGATGGA GGTTTGTTAC 481 AGTTTTCAAC AGGACAGGGT CTCCCTGTCA CCCAGGCTGG AGTTCAGCAC CCAACTTTCT 541 TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac