Construct: ORF ccsbBroadEn_12012
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007194.1_s300c1, BRDN0000394960
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CES1P1 (51716)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1066 | CES1 | carboxylesterase 1 | NM_001266.5 | 24.8% | 22.6% | (many diffs) |
| 2 | human | 1066 | CES1 | carboxylesterase 1 | NM_001025194.2 | 24.7% | 22.6% | (many diffs) |
| 3 | human | 1066 | CES1 | carboxylesterase 1 | XM_005255774.2 | 24.7% | 22.6% | (many diffs) |
| 4 | human | 1066 | CES1 | carboxylesterase 1 | NM_001025195.2 | 24.7% | 22.6% | (many diffs) |
| 5 | human | 51716 | CES1P1 | carboxylesterase 1 pseudoge... | NR_003276.2 | 19.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 522
- ORF length:
- 453
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGTGTGGATC CACGGAGGGG GGCTGATGGT GGGTGCGGCA TCAACCTATG 121 ATGGGCTGGC CCTTGCTGCC CATGAAAACG TGGTGGTGGT GACCATTCAA TATCGCCTGG 181 GCATCTGGGG ATTCTTCAGC ACAGGGGATG AACACAGCCC GGGGAACTGT GGTCACCTGG 241 ACCAGCTGGC TGCCCTGCAC TGGGTCCAGG ACAACATTGC CAGCTTTGGA GGGAACCCAG 301 GCTCTGTGAC CATCTTTGGA GGGTCAGCGG GAGGAGAAAG TGTCTCTGTT CTTGTTTTGT 361 CTCCATTGGC CAAGAACCTC TTCCACCGGG CCATTTCTGA GAGTGGCGTG GCCCTCACTT 421 CTGTTCTGGT GAAGAAAGGT GATGTCAAGC CCTTGGCTGA GGTAGGTCTC CGGCTGGTAC 481 GTCTCTGGCT GGACACCCAC ACCTCCTTGG CTCTATGCTC CTTGCCAACT TTCTTGTACA 541 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac